Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0225 ATGAAGTTCTTTCGTTGTTTGATATTTCTAATAGTAGCTCTTTTGGGATTGGCAAGCTCTAGCCAAGCTCAATTGCAGCTTGGATTTTACGCAAAGAGTTGCCCAAAAGCTGAGAAAATTGTGTATGATTTCGTTAATCAGCACATCCATAATGCTCCCACCTTGGCTGCTGCCTTCATTAGAATGCATTTTCATGATTGCTTTGTCAGGGGTTGTGATGCATCTGTGCTTTTGAACTCAACCTCAAGCCGCCAAAGCGAGAAGGCGGCTGCTCCGAATCGAACACTAAGAGGGTTTGATTTCATTGATAGAATCAAGAAACTGATAGAAGCTGAGTGCCCTGGAGTTGTCTCTTGCGCTGATATTCTTTCTTTGCTTGCCAGAGATTCTGTAGTTGCCACTGGAGGTCCGTTTTGGAGGGTTCCAACAGGAAGAAGGGATGGTTTGATTTCAATATCTTCTGAAGCATTAGCCAATATTCCCCCTCCATTTGGCAATCTCTCAACTCTTCAAAGACTTTTTGCAAACCAGGGACTTGATCTCAAAGATTTGGTTGTGCTATCTGGAGCACACACGATCGGCGTATCTGGTTGCCCATCATTTTCAAACCGGCTCTTCAACTTCACCGGAGTCGGAGACGAAGATCCGTCGCTCGACAGCGAATACGCGGCGAATCTCAGAGCAAGAAAATGCAAAACTATAAATGACAACACCACCATTGTGGAAATGGATCCTGGAAGTTTCAGAACCTTTGATCTTAGCTATTACTCTCTTCTCCTCAAAAGAAGAGGTCTGTTCCAATCTGATGCAGCTCTGACTACTAGTCCAATCACAAAGGGTTTCATTCTTCAAATTCTTCAAGGCTCGGTCCAGAATTTCTTTGCTGAATTTGCTTTGTCAATGGAGAAGATGAATAGGATTAATGTTAAGACAGGATTGGAAGGTGAGATTAGGAAGACTTGTGCTCTTGTTAATACTTGA 981 43.02 MKFFRCLIFLIVALLGLASSSQAQLQLGFYAKSCPKAEKIVYDFVNQHIHNAPTLAAAFIRMHFHDCFVRGCDASVLLNSTSSRQSEKAAAPNRTLRGFDFIDRIKKLIEAECPGVVSCADILSLLARDSVVATGGPFWRVPTGRRDGLISISSEALANIPPPFGNLSTLQRLFANQGLDLKDLVVLSGAHTIGVSGCPSFSNRLFNFTGVGDEDPSLDSEYAANLRARKCKTINDNTTIVEMDPGSFRTFDLSYYSLLLKRRGLFQSDAALTTSPITKGFILQILQGSVQNFFAEFALSMEKMNRINVKTGLEGEIRKTCALVNT 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1503973 1505768 - evm.model.ptg000013l.225 HCH7g0225 547510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0225 326 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0225 326 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0225 326 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0225 326 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0225 326 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0225 326 PANTHER PEROXIDASE 25-RELATED 17 321 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
HCH7g0225 326 FunFam Peroxidase 161 304 - -
HCH7g0225 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
HCH7g0225 326 Gene3D Peroxidase, domain 2 161 304 - -
HCH7g0225 326 ProSiteProfiles Plant heme peroxidase family profile. 24 325 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0225 326 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
HCH7g0225 326 FunFam Peroxidase 28 171 - -
HCH7g0225 326 SUPERFAMILY Heme-dependent peroxidases 24 325 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0225 326 Pfam Peroxidase 41 282 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0225 326 Gene3D - 29 325 - -
HCH7g0225 326 CDD secretory_peroxidase 24 324 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH7g0225 326 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0225 326 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0225 326 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0225 326 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0225 326 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0225 326 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0225 326 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0225 326 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0225 326 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1653 HCH-Chr6:49475401 HCH7g0225 HCH-Chr7:1503973 6.00E-54 dispersed
HCH1g1061 HCH-Chr1:58420908 HCH7g0225 HCH-Chr7:1503973 2.40E-65 transposed
HCH8g0835 HCH-Chr8:44859352 HCH7g0225 HCH-Chr7:1503973 2.90E-71 transposed
HCH2g0749 HCH-Chr2:51161086 HCH7g0225 HCH-Chr7:1503973 2.10E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0225 K00430 - mdm:103442590 485.337