Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0229 ATGCCAGCCGGAATGATGATTCCGGCAAGAAACGTACCTTCGATGATCGGAAGGAATGGAAACGGTGGTGTATTTGGATCCTCGGCGAGTCTTGTTCTTGGTCAGCCAAATATGATGGAAGATGGTCCATTGCATGTATTGGAAATGGGACAAAACGCAATGGGAGAGAACGATTATGGGAGAATGAGAGAAGCAGAAGACTTTGATAGTGCAACGAAATCAAGCAGTGAGAATCATGAGGCTGCTAATTCTGGTGATGACAATGACCCACGACCCAAAAAGAAGCGTTACCATCGCCACACTCAGCATCAGATCCAACAAATGGAAGCGTTTTTCAAGGAATGTCCACACCCAGATGATAAGCAAAGGAAGGAGCTGAGTAGGGAGTTGGCTTTAGAGCCATTGCAAATCAAGTTTTGGTTCCAAAACAAGCGCACTCAAATGAAAACGCATCATGAGCGACATGAAAACACTCAGCTCCGGACAGAAAACGAGAAGCTCCGGTCAGATAATATGAGGTACAGGGAAGCTCTTAGTAACGCTTCATGTCCCAATTGTGGCGGTCCGACGGCTATCGGAGAAATGTCCTTTGATGAACATCATCTTAGGCTTGAAAATGCCCGCTTGAGAGAAGAGATTGATCGAATTTCAGCCATAGCTGCAAAATATGTAGGCAAGCCAGTATCAAACTACCCTCTTCTTTCTCCACCAGTTCCTTCAAGGCCATTAGAACTTGGAATGGGAAGCTATGGAGGGCATGATTTAGGCATTGGATCAGCTGGTGACTTGTATGGGACAGGAGACATTCTTAGGTCTATTAGTGCTCCTTCTGAAGCTGATAAACCAATAATTATAGAGCTTGCAGTTGCAGCAATGGAGGAATTATTCAGAATGGCTCAAATGGGGGAGCCCTTATGGATGACAGCTCTAGATGGTTCAACTAGAGTTCTAAATGAAGATGAATATATAAGAACTTTTCCAAGAGGAATTGGACCAAAGCCCTCTGGATTTACCTCTGAAGCTTCTAGGGAAACTGCTGTTGTTATCATGAATCATATTAACCTTGTTGAGATACTCATGGATGTGAATCAATGGTCAAGTGTATTCAGTGGGATTGTGTCAAGAGCTGTGACATTGGAAGTATTGTCAACTGGTGTTGCTGGAAACTATAATGGAGCATTGCAAGTGATGACATCTGAGTTGCAAGTTCCTTCACCCCTGGTTCCAACTCGAGAGAGTTACTTTGTAAGGTATTGTAAACAGCATGGAGAAGGAACTTGGGCGGTTGTTGATGTTTCATTGGACAATTTACGCCCCAATCCGGTTCTCAGATGCAGAAGAAGGCCTTCCGGCTGTTTAATCCAAGATATGCCTAATGGATATTCTAAGGTAACATGGGTTGAACACGTAGAGGTGGATGAAAGAGGCGTCCACAATTTGTACAAGCAGCTAGTTAGCTCCGGTGAAGCATTTGGAGCAAAGCGATGGGTCGCAACCTTAGGCCGTCAATGCGAACGAATCGCCAGCGCCATGGCTACAAGCATTCCGAACGGTGATAGCGGCGTGATAACGAATCAAGAAGGAAGAAAGAGTATGTTGAAGCTGGCTGAGAGAATGGTGATGAGCTTTTGCGGCGGTGTAAGTGCGTCGACGACACACACATGGACGACGTTGTCGGGGACCGGAGCCGACGATGTTCGAGTTATGACAAGGAAGAGTGTTAATGATCCTGGGAGACCTCCCGGCATTGTGCTCAGTGCTGCTACTTCCTTCTGGCTTCCGGTTCCTCCTACGAGAGTATTTGATTTCCTCCGAGATGAGAATTCTCGAAGTGAGTGGGATATCCTTTCCAATGGCGGGGTTGTGCAAGAAATGGCACACATTGCCAATGGCCGTGACACGGGGAACTCCGTTTCATTGTTACGAGTAAATAGTGCAAATTCAAGCCAAAGCAACATGTTAATACTACAAGAGAGTTGCACGGATCAAACAGCCTCATTTGTGATATACGCTCCTGTGGATATAGTAGCTATCAATGTGGTTCTAAATGGTGGAGATCCTGACTATGTTGCTCTTCTTCCCTCTGGATTTGCCATCCTTCCTGATGGAACCGCCGCATCCGGAAACGGAAGTGGCGGAGTGAGGGAGGCGGGGTCCGGTGGATCGCTTTTAACAGTTGCATTTCAGATTTTAGTTGATTCAATTCCCACAGCTAAGCTTTCTCTTGGATCAGTTGCAACTGTTAACAATCTCATTGCCTGCACTGTTGAGAGGATTAAAGCCTCTTTATCATGCGATAATCAATGA 2307 45.69 MPAGMMIPARNVPSMIGRNGNGGVFGSSASLVLGQPNMMEDGPLHVLEMGQNAMGENDYGRMREAEDFDSATKSSSENHEAANSGDDNDPRPKKKRYHRHTQHQIQQMEAFFKECPHPDDKQRKELSRELALEPLQIKFWFQNKRTQMKTHHERHENTQLRTENEKLRSDNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVSNYPLLSPPVPSRPLELGMGSYGGHDLGIGSAGDLYGTGDILRSISAPSEADKPIIIELAVAAMEELFRMAQMGEPLWMTALDGSTRVLNEDEYIRTFPRGIGPKPSGFTSEASRETAVVIMNHINLVEILMDVNQWSSVFSGIVSRAVTLEVLSTGVAGNYNGALQVMTSELQVPSPLVPTRESYFVRYCKQHGEGTWAVVDVSLDNLRPNPVLRCRRRPSGCLIQDMPNGYSKVTWVEHVEVDERGVHNLYKQLVSSGEAFGAKRWVATLGRQCERIASAMATSIPNGDSGVITNQEGRKSMLKLAERMVMSFCGGVSASTTHTWTTLSGTGADDVRVMTRKSVNDPGRPPGIVLSAATSFWLPVPPTRVFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNSVSLLRVNSANSSQSNMLILQESCTDQTASFVIYAPVDIVAINVVLNGGDPDYVALLPSGFAILPDGTAASGNGSGGVREAGSGGSLLTVAFQILVDSIPTAKLSLGSVATVNNLIACTVERIKASLSCDNQ 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1529625 1535034 - evm.model.ptg000013l.229 HCH7g0229 547514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0229 768 SUPERFAMILY Bet v1-like 525 760 - -
HCH7g0229 768 CDD homeodomain 94 152 IPR001356 GO:0003677(InterPro)
HCH7g0229 768 ProSiteProfiles START domain profile. 277 509 IPR002913 GO:0008289(InterPro)
HCH7g0229 768 Gene3D - 68 150 - -
HCH7g0229 768 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 77 765 IPR042160 -
HCH7g0229 768 Coils Coil 157 177 - -
HCH7g0229 768 MobiDBLite consensus disorder prediction 66 103 - -
HCH7g0229 768 MobiDBLite consensus disorder prediction 66 93 - -
HCH7g0229 768 CDD START_ArGLABRA2_like 281 505 - -
HCH7g0229 768 SMART START_1 286 506 IPR002913 GO:0008289(InterPro)
HCH7g0229 768 SUPERFAMILY Homeodomain-like 81 150 IPR009057 -
HCH7g0229 768 FunFam Homeobox-leucine zipper protein GLABRA 2 286 505 - -
HCH7g0229 768 SUPERFAMILY Bet v1-like 279 508 - -
HCH7g0229 768 Gene3D - 339 493 IPR023393 -
HCH7g0229 768 FunFam Homeobox-leucine zipper protein HDG1 79 167 - -
HCH7g0229 768 SMART HOX_1 92 155 IPR001356 GO:0003677(InterPro)
HCH7g0229 768 ProSiteProfiles 'Homeobox' domain profile. 91 151 IPR001356 GO:0003677(InterPro)
HCH7g0229 768 Pfam START domain 287 506 IPR002913 GO:0008289(InterPro)
HCH7g0229 768 Pfam Homeodomain 94 149 IPR001356 GO:0003677(InterPro)
HCH7g0229 768 ProSitePatterns 'Homeobox' domain signature. 126 149 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1204 HCH-Chr11:44340270 HCH7g0229 HCH-Chr7:1529625 8.30E-194 dispersed
HCH4g1401 HCH-Chr4:10256039 HCH7g0229 HCH-Chr7:1529625 4.20E-134 dispersed
HCH5g0248 HCH-Chr5:1460797 HCH7g0229 HCH-Chr7:1529625 5.30E-175 dispersed
HCH6g0168 HCH-Chr6:2233292 HCH7g0229 HCH-Chr7:1529625 8.40E-151 dispersed
HCH7g0229 HCH-Chr7:1529625 HCH7g1594 HCH-Chr7:48243759 1.10E-201 dispersed
HCH3g0018 HCH-Chr3:158050 HCH7g0229 HCH-Chr7:1529625 1.90E-192 transposed
HCH9g0441 HCH-Chr9:2808110 HCH7g0229 HCH-Chr7:1529625 3.90E-158 transposed
HCH14g0831 HCH-Chr14:36215430 HCH7g0229 HCH-Chr7:1529625 4.00E-270 wgd
HCH2g0744 HCH-Chr2:51109525 HCH7g0229 HCH-Chr7:1529625 0.00E+00 wgd
HCH3g0555 HCH-Chr3:3697787 HCH7g0229 HCH-Chr7:1529625 2.50E-277 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33834 PF01852 START 1.30E-59 CL0209 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0229 K09338 - csv:101219415 1314.29