Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0232 ATGAGACAGTTCGTGGGCGTGTCTCTCTGTTTTGTGATATGGCTACTTCTCACTGTTTCGATCCGGTGCCACCAAAAGCCTGCGGTCGTGAATATTGGTTCGGTTTTTACTTTCAATTCTGTTATTGGTAGAGCTGCAAAACCGGCTATGGAAGCTGCAATCGAGGACATAAATAAGAACCCAAACATTCTTAATGGGACCGTGCTGCAGCTGCTAATGAAGGATGCTAATTGCAGTGGCTTTGTCGGCTCCGTACGTTCTATGCAGGCATTTGAGAAAGAGATTCTGACCATTATTGGTCCACAGTCCTCTGTATTGGCTCATATGATATCTCATATTTCTAATGCTCTGCAAGTTCCTCAAGTATCATATGGCGCCACTGATCCAACGTTGTCGGCTCTCCAATTCCCGTTTTTCCTCCGCGCTACTTTAAGTGACTCGTACCAAATGGCTGCAATAGCTGACTTGATTGATTTTTATGGGTGGAAAGAGGTCATTGCTATATATTTGGATGATGATTATGGGAGAAATGGAGTCTCTTCTTTGGATGATGAACTTCGGAAGAAGACGTGTCATGTTTCTTATAAATTCCCCTTGCCTTCTCTGGTTAGTATGAGTGAGATCACGGAGTTGCTTAACCGATCTAGGTTGCTTGGTCCTCGTGTTTATGTCGTTCATGTTGGCCCTGATCCTCAATTAAGAATCTTTACTATCGCCCATAAGCTTGGTATGATAACTAGTACTTACGTTTGGCTCGCAACTGATTGGCTTGCCACTACTTTAGATTCGTTTTCACCCTCTAATCGTGCTTCACTTGATATTCTTCATGGGGTAGTAGGGCTACGACAACATACTCCAGAATCTAAAAGTAAGAGGGATTTGTGGTCTCGGTTGAGTAAAATGCAGCCAAGTGGTTTGGCTCATGCTGTGTTGAATGTTTATGGACTTTATGCTTATGATTCAGTTTGGATTGTCGCTAAGGCAATCGACAAGTTTCTCAAAGAAAATGGCAATATCACCTTTTCATCCAAGGGTAAGGTATTTGGGTCGAATGCAAGTGAAATTCAACTGGGAAAGCTCAAAGTGTTTGATGGAGGAAGTGATCTGCTTAGAATTATAATGCAAACAAATTACACTGGTTTAACTGGTCAAATTCAGTTTGATGCAGACAGGAATATTATCAATGGCAGCTATGATGTTATTAATATTGATCAAAAGGGAATTCGCACGGTAGGATATTGGTCTAATCACTCGGGCCTCTCGGTCTCACCTCCGGAAACTATGAAATGGAAACAAGAAGATTATTCCTGCTTAGATCAGAGACTTGGCGATGTAGTCTGGCCTGGTGGAAAGACAGATCGACCACGCGGCTGGGTGATTGCAGACTCTAGAAAGCCGCTGAGAATTGTGTTTCCACAAAGAGCAAGTTTTGTTGATTTTGTTACTTTGCTGAACAACAATACAGTTCGAGGATATGCTATTGATATTTTCATTGAAGCTCTCAAGTATGTTCCATATGAAGTTCCTTATGAATTCGTGCCTTTTGGGAATGGTCGAGTCAATCCGAATTACAATGCACTTGTGAAGTCGGTTGCAGATAATGTGTTTGATGCTGCTGTTGGAGACATAGCCATAGTTACCAACCGTACAAAGATTGTTGATTTTTCTCAACCATATACCACTACTGGACTTATCATAGTTGTCCCAGTCAAAGACTCAAAATCAAGTGCTTGGGTGTTTCTTAAACCATTTACATGGGAGATGTGGTGTGTAACTGCAGCTTCTTTTGTGATGATTGGGATTGTCATTTGGATGCTCGAGCATCGAGTCAACGAACATTTTCGAGGTCCTCCCAAGAGGCAGATTGTAACAATGTGTCTGTTCAGCATGTCAACTCTGTTCAAGGCAAATCAAGAAGACACAGTAAGCCCACTGGCACGGCTGGTGATGGTGGTTTGGCTTTTCTTATTAATGGTTATCACGTCAAGCTATACAGCAAGTTTGACATCAATCCTTACCATTCAGCAACTTTCATCACCCATCAATGGAATTGATGACTTGATTGCAAGTAATTTGCCCATAGGATATCAAGTAGGATCATTTGCTTACAGCTATCTGACAGAGAGCCTTTTCATACCAAGTTCTAGACTCTTTTCGCTTGAGTCGCCGGAAGATTATGAGAGAGCACTTCGGCTCGGGCCAAAAGAAGGCGGTGTGGCGGCTATCATTGATGAACTTCCATATGTGGAGCTATTTCTGTCGAAGACGAAAGACTTTGGAATCATTGGGCAACCTTTTACCAAAAGCGGATGGGGATTTGCTTTTCGGCGAGAATCTCCTCTTGCAATCGATATCTCGACTGCGATTTTGAAACTTTCCGAGAATGGAAAACTTCAAGAGATCCATGACTCTTGGTTCTGTAAGTTAGGATGTCCGGGAGATCGTGCAGGGAAATCGGAACCTAACCAACTTCACTTAATCAGCTTCTGGGGTTTGTATCTACTCTGTGGAATCTTCTCACTTGCTGCACTTCTTGTGTTTCTGCAGAGAATAGTTCGCCAATACATCCGCTACAAACGACATCATTCCGAGCAAGTTACTCCATCCCCCATATCAACAAACACCAGCTGTAGTCATTCCATTCAAAGCTTTATAAATTTTATCGACGAGAAGGAAGAAGCCATCAAAAGCTTGTTTCGAGCATCTCATGGTGCTTCAACTCAGAACATCGCCAATTGA 2739 42.46 MRQFVGVSLCFVIWLLLTVSIRCHQKPAVVNIGSVFTFNSVIGRAAKPAMEAAIEDINKNPNILNGTVLQLLMKDANCSGFVGSVRSMQAFEKEILTIIGPQSSVLAHMISHISNALQVPQVSYGATDPTLSALQFPFFLRATLSDSYQMAAIADLIDFYGWKEVIAIYLDDDYGRNGVSSLDDELRKKTCHVSYKFPLPSLVSMSEITELLNRSRLLGPRVYVVHVGPDPQLRIFTIAHKLGMITSTYVWLATDWLATTLDSFSPSNRASLDILHGVVGLRQHTPESKSKRDLWSRLSKMQPSGLAHAVLNVYGLYAYDSVWIVAKAIDKFLKENGNITFSSKGKVFGSNASEIQLGKLKVFDGGSDLLRIIMQTNYTGLTGQIQFDADRNIINGSYDVINIDQKGIRTVGYWSNHSGLSVSPPETMKWKQEDYSCLDQRLGDVVWPGGKTDRPRGWVIADSRKPLRIVFPQRASFVDFVTLLNNNTVRGYAIDIFIEALKYVPYEVPYEFVPFGNGRVNPNYNALVKSVADNVFDAAVGDIAIVTNRTKIVDFSQPYTTTGLIIVVPVKDSKSSAWVFLKPFTWEMWCVTAASFVMIGIVIWMLEHRVNEHFRGPPKRQIVTMCLFSMSTLFKANQEDTVSPLARLVMVVWLFLLMVITSSYTASLTSILTIQQLSSPINGIDDLIASNLPIGYQVGSFAYSYLTESLFIPSSRLFSLESPEDYERALRLGPKEGGVAAIIDELPYVELFLSKTKDFGIIGQPFTKSGWGFAFRRESPLAIDISTAILKLSENGKLQEIHDSWFCKLGCPGDRAGKSEPNQLHLISFWGLYLLCGIFSLAALLVFLQRIVRQYIRYKRHHSEQVTPSPISTNTSCSHSIQSFINFIDEKEEAIKSLFRASHGASTQNIAN 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1548066 1551940 - evm.model.ptg000013l.232 HCH7g0232 547517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0232 912 FunFam Glutamate receptor 703 810 - -
HCH7g0232 912 CDD PBP1_GABAb_receptor_plant 31 424 IPR044440 -
HCH7g0232 912 Pfam Receptor family ligand binding region 46 404 IPR001828 -
HCH7g0232 912 FunFam Glutamate receptor 577 714 - -
HCH7g0232 912 Pfam Ligand-gated ion channel 807 838 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
HCH7g0232 912 Gene3D - 754 813 - -
HCH7g0232 912 FunFam Glutamate receptor 145 302 - -
HCH7g0232 912 Gene3D - 459 576 - -
HCH7g0232 912 FunFam Glutamate receptor 462 577 - -
HCH7g0232 912 Gene3D - 49 395 - -
HCH7g0232 912 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 43 59 - -
HCH7g0232 912 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 318 330 - -
HCH7g0232 912 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 103 131 - -
HCH7g0232 912 Gene3D - 145 420 - -
HCH7g0232 912 SUPERFAMILY Periplasmic binding protein-like I 23 458 IPR028082 -
HCH7g0232 912 CDD GluR_Plant 465 806 - -
HCH7g0232 912 SUPERFAMILY Periplasmic binding protein-like II 445 806 - -
HCH7g0232 912 SMART GluR_14 468 808 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
HCH7g0232 912 Gene3D - 577 709 - -
HCH7g0232 912 PIRSF IGluLR_plant 1 911 IPR017103 -
HCH7g0232 912 Pfam Bacterial extracellular solute-binding proteins, family 3 477 584 IPR001638 -
HCH7g0232 912 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 872 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0232 HCH-Chr7:1548066 HCH7g0393 HCH-Chr7:2827069 9.60E-234 dispersed
HCH2g0741 HCH-Chr2:51074149 HCH7g0232 HCH-Chr7:1548066 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0232 K05387 - csv:101203158 1363.59