Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0254 ATGAAACCTCGTATTGGGTTCGTGTTGTTTGTTTTGATTTCTGTGTTTTTCATCACTGTTCATTCAAATTGTCCACGAACTTGTGATGTAGCTTTAGCTTCTTACTATGTTGAGCAAGGAAGTAATTTAACTTTCATTGCTGAAATTTTCAATATTCCTTCCCCGGATACCATTGTTAGTTATAACAGAGACCGAATGTCCAGCAGAGATAGTTTTTCATGGGGAATCAGGATCAATATCCCATTTTCCTGTGATTGTATTAGAAATGAGTTTCTTGGTCATGAATTTCGGTTTCGGATTCGGACAGGAGATGTGTATCAAACTATTTCTCGTGATTATTATGCGAATTTGACGACGGTTGGGATGTTACAGAGTTTCAATAGTTTTGATGTTACTAATCTTCCCTTAAATGGAGATTTGAATGTTGTGGTGAATTGTTCTTGTGGGGATCCTAATGTTTCTGAAGAGTTTGGATTGTTTGTTACTTATCCGATACGAGCAAATGATACTTGGAATACGTTGGCTAGAGATACAAATATTAGCTTGAATGTGCTGCAGGATTACAATAGGGGTGTGAATTTCAGCCCTGGAAATTTGATTTTTATTCCTGGTAGAGATCAAAATGGTGTCTATCCACCTCTGATATTAAGCACAGGACTTGCAGGTGGAGCCATTGCAGGAATAGTTATAGGAGCAGTAGCTGGAGTTCTACTTGTAGCAGGTTGCGCATACGTTGTGATTTATCGAAGGAAGAAGTTGAAAAGAGCAAAATTGCAGGCATTCTCTCGAGATCTATCTCAAGATGGGCACGGTCTTGTACCTGGAAGTTCTGGGGATAAATCTGCAGAATCAAACGTTCGTGGTGGTGCTGTACCTGGCATTACGGGCATTACTGTGGACAAATCGGTGGACTTCTCATTGGAAGAACTTGCTAAGGCAACCGACAACTTTAGTTTGGCAAATAAAATTGGTGAAGGTGGTTTTGGAGCTGTTTACTATGCGGAACTCAGAGGAGAGAAAGCAGCAATAAAGAAGATGGATATGCAAGCTACCAGAGAGTTCCTTGCTGAAATTAAGGTTCTAACACGCGTTCATCACTTGAACCTGGTGCGCTTGATAGGATATTGTGTTGAGAATTCTCTATTCCTAGTCTATGAGTTCATTGAGAATGGCAATTTAAGTCAGCATTTGCGTGGAACAGCTAGGGATCCATTGTCATGGCCTACTAGGGTGCAAATAGCTCTTGATTCAGCCAGAGGCCTTGAGTATATCCATGAGCACACCGTTCCTGTTTATATTCACCGTGATATCAAGTCAGCAAACATATTGATTGACAAAAACTTTCATGCAAAGGTTGCAGATTTTGGTTTAACTAAGTTGACTGAAGTTGGAAATTCATCACTTCCTACTCGGCTTGTGGGCACATTTGGATATATGCCACCCGAATATGCTCAATACGGTGATGTTTCTCCCAAGATCGACGTATACGCTTTTGGGGTCGTTCTTTATGAGCTTATTTCTGCCAAGGAAGCTGTGGTCAAGACAAATAGAGCTAGCTCTGTTAATGAATCAAAAGGCCTCGTCGCTCTGTTTGAAGATGTTCTTAATCAACCGGATGCAAAAGAGAACCTCCATAAAATAGTCGACACGAGACTTGAAGACAACTACCCTCTCGATTCGGTTTTCAAGATGGCTCAGCTCGCCAAGGCGTGTACTCACGAGAATCCACAGCTACGTCCGAGCATGAGATCTATCGTGGTCGCTCTCATGACACTTTCATCCACAACCGAGGATTGGGATGTTGGGTCTTTCTATGAAAACCATGCTCTTGTCAACTTGATGTCTGGAAGGTAG 1854 41.48 MKPRIGFVLFVLISVFFITVHSNCPRTCDVALASYYVEQGSNLTFIAEIFNIPSPDTIVSYNRDRMSSRDSFSWGIRINIPFSCDCIRNEFLGHEFRFRIRTGDVYQTISRDYYANLTTVGMLQSFNSFDVTNLPLNGDLNVVVNCSCGDPNVSEEFGLFVTYPIRANDTWNTLARDTNISLNVLQDYNRGVNFSPGNLIFIPGRDQNGVYPPLILSTGLAGGAIAGIVIGAVAGVLLVAGCAYVVIYRRKKLKRAKLQAFSRDLSQDGHGLVPGSSGDKSAESNVRGGAVPGITGITVDKSVDFSLEELAKATDNFSLANKIGEGGFGAVYYAELRGEKAAIKKMDMQATREFLAEIKVLTRVHHLNLVRLIGYCVENSLFLVYEFIENGNLSQHLRGTARDPLSWPTRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFHAKVADFGLTKLTEVGNSSLPTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELISAKEAVVKTNRASSVNESKGLVALFEDVLNQPDAKENLHKIVDTRLEDNYPLDSVFKMAQLAKACTHENPQLRPSMRSIVVALMTLSSTTEDWDVGSFYENHALVNLMSGR 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1751507 1757596 - evm.model.ptg000013l.254 HCH7g0254 547539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0254 617 Gene3D Transferase(Phosphotransferase) domain 1 388 607 - -
HCH7g0254 617 Gene3D Phosphorylase Kinase; domain 1 297 387 - -
HCH7g0254 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g0254 617 SMART serkin_6 317 591 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0254 617 ProSiteProfiles Protein kinase domain profile. 317 592 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0254 617 CDD STKc_IRAK 323 586 - -
HCH7g0254 617 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 8 616 IPR044812 GO:0019199(InterPro)|GO:0045087(InterPro)
HCH7g0254 617 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524(InterPro)
HCH7g0254 617 SUPERFAMILY Protein kinase-like (PK-like) 301 589 IPR011009 -
HCH7g0254 617 Pfam Protein tyrosine and serine/threonine kinase 319 588 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g0254 617 SMART LysM_2 162 203 IPR018392 -
HCH7g0254 617 SMART LysM_2 34 81 IPR018392 -
HCH7g0254 617 FunFam PTI1-like tyrosine-protein kinase 3 388 603 - -
HCH7g0254 617 FunFam LysM receptor kinase 2 296 387 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0149 HCH-Chr6:1993995 HCH7g0254 HCH-Chr7:1751507 3.00E-75 dispersed
HCH7g0254 HCH-Chr7:1751507 HCH8g0750 HCH-Chr8:44129632 1.10E-60 dispersed
HCH7g0254 HCH-Chr7:1751507 HCH13g0628 HCH-Chr13:4892828 3.20E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81624 PF07714 PK_Tyr_Ser-Thr 6.00E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0254 K13429 - csv:101203576 927.932