Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH7g0260 | ATGGAGAGAGGATCTAGTGGAAGCAGTGGAAATTCTTTCATGGTTGGATTTGTGGGAGAAAATGGTAATAACAACAATAATGGACTTTCTTCTATGATGATGATGAATTCTGGGGCATCACAAATATTGGATCAAAATAACAATAATAACAAGCTGTTTCTTCCTTTATCTTGGACCACCACCACCTCCGCCGCTTCCACCGCAGTCACCAGCGGCAGAGCTAAAATCATGACTCACCCTCTTTTCCCTCGTCTCTTGGCTGCCTATGTTAATTGTCAAAAAGTCGGAGCTCCGCCGGAAGTGGTGGCTAGGTTAGAACAGGCGTGTGCTGCCACCATGAGTGATTTTAGGTCAACAGCACGTGGTGATGATCCTGCATTAGATCAGTTCATGGAAGCTTATTGTGAGATGTTGACCAAGTATGAGCAAGAGTTGACTAAACCTTTTAAAGAAGCTATGCTTTTCTTTTCAAGAATCGAGTCTCAGCTTAAAGCTCTAGCAGTTTCTTCTAATTCTGATGCTTGCGACTTTGGCAGCCCAAATGATCAATCGTCCAAGGAGTTCGATGTCGATGTCAACGAAAACTATATCGATCCTCAAGCAGAAGATAAGGAACTGAAAGGCCAGCTTCTGCGCAAATACAGTGGCTATCTTGGTAACTTGAAGCAGGAATTTCTCAAGAAGAAGAAGAATGGAAAGTTGCCGAAAGAAGCTCGACAACAGTTGCTCGACTGGTGGAGCCGACACTACAAATGGCCCTACCCCTCGGAGTCTCAAAAGGTAGCGCTAGCGGAATCGACGGGGTTGGACTTGAAGCAGATCAATAACTGGTTCATCAACCAGAGAAAGCGGCATTGGAAGCCATCGGAGGAGATGCAGTTCGTGGTTATGGATGCTACTCATCCTCACTACTATCTAGACAATGTTCACTGCAACCCCTTCTCTATGGATTGCTCTTCAACTCTTCTTTGA | 972 | 44.86 | MERGSSGSSGNSFMVGFVGENGNNNNNGLSSMMMMNSGASQILDQNNNNNKLFLPLSWTTTTSAASTAVTSGRAKIMTHPLFPRLLAAYVNCQKVGAPPEVVARLEQACAATMSDFRSTARGDDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFFSRIESQLKALAVSSNSDACDFGSPNDQSSKEFDVDVNENYIDPQAEDKELKGQLLRKYSGYLGNLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEEMQFVVMDATHPHYYLDNVHCNPFSMDCSSTLL | 323 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 1790952 | 1793841 | - | evm.model.ptg000013l.260 | HCH7g0260 | 547545 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH7g0260 | 323 | ProSiteProfiles | 'Homeobox' domain profile. | 225 | 288 | IPR001356 | GO:0003677(InterPro) | |
HCH7g0260 | 323 | ProSitePatterns | 'Homeobox' domain signature. | 263 | 286 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
HCH7g0260 | 323 | Gene3D | - | 230 | 292 | - | - | |
HCH7g0260 | 323 | CDD | homeodomain | 237 | 289 | IPR001356 | GO:0003677(InterPro) | |
HCH7g0260 | 323 | SMART | HOX_1 | 227 | 292 | IPR001356 | GO:0003677(InterPro) | |
HCH7g0260 | 323 | Pfam | ELK domain | 205 | 226 | IPR005539 | GO:0003677(InterPro) | |
HCH7g0260 | 323 | Pfam | Homeobox KN domain | 245 | 284 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
HCH7g0260 | 323 | SMART | KNOX2_2 | 117 | 168 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
HCH7g0260 | 323 | FunFam | Homeobox protein knotted-1-like 2 | 230 | 292 | - | - | |
HCH7g0260 | 323 | ProSiteProfiles | ELK domain profile. | 205 | 225 | IPR005539 | GO:0003677(InterPro) | |
HCH7g0260 | 323 | SMART | ELK_2 | 205 | 226 | IPR005539 | GO:0003677(InterPro) | |
HCH7g0260 | 323 | SMART | KNOX1_2 | 70 | 114 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
HCH7g0260 | 323 | Pfam | KNOX1 domain | 73 | 110 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
HCH7g0260 | 323 | Pfam | KNOX2 domain | 122 | 166 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
HCH7g0260 | 323 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 88 | 295 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
HCH7g0260 | 323 | SUPERFAMILY | Homeodomain-like | 227 | 301 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0393 | HCH-Chr12:2235004 | HCH7g0260 | HCH-Chr7:1790952 | 1.40E-31 | dispersed | |
HCH4g0036 | HCH-Chr4:226759 | HCH7g0260 | HCH-Chr7:1790952 | 2.90E-60 | dispersed | |
HCH4g0559 | HCH-Chr4:3620026 | HCH7g0260 | HCH-Chr7:1790952 | 1.30E-65 | dispersed | |
HCH5g0461 | HCH-Chr5:3108955 | HCH7g0260 | HCH-Chr7:1790952 | 2.30E-27 | dispersed | |
HCH7g0260 | HCH-Chr7:1790952 | HCH8g1394 | HCH-Chr8:48650714 | 8.80E-65 | dispersed | |
HCH14g0789 | HCH-Chr14:35952103 | HCH7g0260 | HCH-Chr7:1790952 | 4.80E-104 | wgd | |
HCH2g0714 | HCH-Chr2:50858052 | HCH7g0260 | HCH-Chr7:1790952 | 3.40E-91 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33839 | PF03791 | KNOX2 | 3.90E-22 | No_clan | HCH | TF |
Pathway information
