Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0260 ATGGAGAGAGGATCTAGTGGAAGCAGTGGAAATTCTTTCATGGTTGGATTTGTGGGAGAAAATGGTAATAACAACAATAATGGACTTTCTTCTATGATGATGATGAATTCTGGGGCATCACAAATATTGGATCAAAATAACAATAATAACAAGCTGTTTCTTCCTTTATCTTGGACCACCACCACCTCCGCCGCTTCCACCGCAGTCACCAGCGGCAGAGCTAAAATCATGACTCACCCTCTTTTCCCTCGTCTCTTGGCTGCCTATGTTAATTGTCAAAAAGTCGGAGCTCCGCCGGAAGTGGTGGCTAGGTTAGAACAGGCGTGTGCTGCCACCATGAGTGATTTTAGGTCAACAGCACGTGGTGATGATCCTGCATTAGATCAGTTCATGGAAGCTTATTGTGAGATGTTGACCAAGTATGAGCAAGAGTTGACTAAACCTTTTAAAGAAGCTATGCTTTTCTTTTCAAGAATCGAGTCTCAGCTTAAAGCTCTAGCAGTTTCTTCTAATTCTGATGCTTGCGACTTTGGCAGCCCAAATGATCAATCGTCCAAGGAGTTCGATGTCGATGTCAACGAAAACTATATCGATCCTCAAGCAGAAGATAAGGAACTGAAAGGCCAGCTTCTGCGCAAATACAGTGGCTATCTTGGTAACTTGAAGCAGGAATTTCTCAAGAAGAAGAAGAATGGAAAGTTGCCGAAAGAAGCTCGACAACAGTTGCTCGACTGGTGGAGCCGACACTACAAATGGCCCTACCCCTCGGAGTCTCAAAAGGTAGCGCTAGCGGAATCGACGGGGTTGGACTTGAAGCAGATCAATAACTGGTTCATCAACCAGAGAAAGCGGCATTGGAAGCCATCGGAGGAGATGCAGTTCGTGGTTATGGATGCTACTCATCCTCACTACTATCTAGACAATGTTCACTGCAACCCCTTCTCTATGGATTGCTCTTCAACTCTTCTTTGA 972 44.86 MERGSSGSSGNSFMVGFVGENGNNNNNGLSSMMMMNSGASQILDQNNNNNKLFLPLSWTTTTSAASTAVTSGRAKIMTHPLFPRLLAAYVNCQKVGAPPEVVARLEQACAATMSDFRSTARGDDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFFSRIESQLKALAVSSNSDACDFGSPNDQSSKEFDVDVNENYIDPQAEDKELKGQLLRKYSGYLGNLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEEMQFVVMDATHPHYYLDNVHCNPFSMDCSSTLL 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1790952 1793841 - evm.model.ptg000013l.260 HCH7g0260 547545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0260 323 ProSiteProfiles 'Homeobox' domain profile. 225 288 IPR001356 GO:0003677(InterPro)
HCH7g0260 323 ProSitePatterns 'Homeobox' domain signature. 263 286 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH7g0260 323 Gene3D - 230 292 - -
HCH7g0260 323 CDD homeodomain 237 289 IPR001356 GO:0003677(InterPro)
HCH7g0260 323 SMART HOX_1 227 292 IPR001356 GO:0003677(InterPro)
HCH7g0260 323 Pfam ELK domain 205 226 IPR005539 GO:0003677(InterPro)
HCH7g0260 323 Pfam Homeobox KN domain 245 284 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH7g0260 323 SMART KNOX2_2 117 168 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH7g0260 323 FunFam Homeobox protein knotted-1-like 2 230 292 - -
HCH7g0260 323 ProSiteProfiles ELK domain profile. 205 225 IPR005539 GO:0003677(InterPro)
HCH7g0260 323 SMART ELK_2 205 226 IPR005539 GO:0003677(InterPro)
HCH7g0260 323 SMART KNOX1_2 70 114 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH7g0260 323 Pfam KNOX1 domain 73 110 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH7g0260 323 Pfam KNOX2 domain 122 166 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH7g0260 323 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 88 295 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH7g0260 323 SUPERFAMILY Homeodomain-like 227 301 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0393 HCH-Chr12:2235004 HCH7g0260 HCH-Chr7:1790952 1.40E-31 dispersed
HCH4g0036 HCH-Chr4:226759 HCH7g0260 HCH-Chr7:1790952 2.90E-60 dispersed
HCH4g0559 HCH-Chr4:3620026 HCH7g0260 HCH-Chr7:1790952 1.30E-65 dispersed
HCH5g0461 HCH-Chr5:3108955 HCH7g0260 HCH-Chr7:1790952 2.30E-27 dispersed
HCH7g0260 HCH-Chr7:1790952 HCH8g1394 HCH-Chr8:48650714 8.80E-65 dispersed
HCH14g0789 HCH-Chr14:35952103 HCH7g0260 HCH-Chr7:1790952 4.80E-104 wgd
HCH2g0714 HCH-Chr2:50858052 HCH7g0260 HCH-Chr7:1790952 3.40E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33839 PF03791 KNOX2 3.90E-22 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0260 - - - 0.0