Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0262 ATGGCACAATTGCCTCCTAAAATCCCAAATTGGCCTGATTTTCCACGCCAAAAAATACCATCAATGGAAAGTTTTGCACCAATTGTCACCACCGCGGCCGCCGCAGCCGTAACCCATCAAAACCCGTCTTGGGTAGACGAGTTTCTCGACTTCTCGTCGGCGAGACGTGGCTCACACCGACGTTCCGTCAGCGACTCCATCACGTTCCTTGAAATGCCAATGTTGGATGAAGAATGCCGTGGCGGAGGTGGAGGAGGCGGATCGCCACCGGGATGCGTGTCAGGGAACCGGAATGAATTTGACAGGTTTGACGACGAGCAGTTCATGTCGATGTTTACCGATGAGATCTCTACCGGCACCGCGGTGGGTCCCACCGTGTCGTCGTCGAACCCGTCTACGCCGTCCGATCATAACAGCATTAACGACGAGAAAGACGACAGGGCGACGAAGAACGACGGCGAGAATTATGAAAATAAAAACGAATCTGAAGAAGTGGAAAGCCAACAGCAAACAGAAACTCAATCGCGATCCAATGCAGCGGCGACGACAGCTTCCGCCGATCGAATTACCGATCCCAAAAGGGTTAAAAGAATTCTGGCAAATCGGCAATCAGCACAAAGATCACGAGTGAGGAAGCTTCAATACATATCAGAGTTAGAACGGAGCGTCACATCGTTACAGGCTGAAGTTTCTGTACTTTCACCGCGAGTGGCTTTTCTGGACCACCAGAGGTTGCTTCTAAACGTCGATAATAGCGCTCTCAAGCAAAGAATCGCCGCCCTTGCCCAAGATAAGATTTTTAAAGACGCTCATCAAGAGGCGCTAAAGAGGGAAATAGAGAGGCTGAGGCAAGTATATCACCAACAGAACATCAAGAAGACGGAAAACGCACCACCATCACCATCACCGCCACCACCATCAATATCGCCCGACACCAAGCTTCCTACCGCAAATCAAATCGAGCAGGTTCAAAATGTCTAG 981 50.36 MAQLPPKIPNWPDFPRQKIPSMESFAPIVTTAAAAAVTHQNPSWVDEFLDFSSARRGSHRRSVSDSITFLEMPMLDEECRGGGGGGGSPPGCVSGNRNEFDRFDDEQFMSMFTDEISTGTAVGPTVSSSNPSTPSDHNSINDEKDDRATKNDGENYENKNESEEVESQQQTETQSRSNAAATTASADRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNIKKTENAPPSPSPPPPSISPDTKLPTANQIEQVQNV 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1824321 1827096 - evm.model.ptg000013l.262 HCH7g0262 547547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0262 326 SMART brlzneu 189 253 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g0262 326 MobiDBLite consensus disorder prediction 297 311 - -
HCH7g0262 326 SUPERFAMILY Leucine zipper domain 193 247 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g0262 326 CDD bZIP_plant_RF2 194 244 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g0262 326 MobiDBLite consensus disorder prediction 167 185 - -
HCH7g0262 326 Coils Coil 272 292 - -
HCH7g0262 326 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 196 211 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g0262 326 Gene3D - 192 263 - -
HCH7g0262 326 MobiDBLite consensus disorder prediction 138 166 - -
HCH7g0262 326 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 191 243 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g0262 326 MobiDBLite consensus disorder prediction 118 137 - -
HCH7g0262 326 MobiDBLite consensus disorder prediction 287 326 - -
HCH7g0262 326 Pfam Basic region leucine zipper 190 238 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g0262 326 MobiDBLite consensus disorder prediction 312 326 - -
HCH7g0262 326 MobiDBLite consensus disorder prediction 78 99 - -
HCH7g0262 326 PANTHER BASIC LEUCINE ZIPPER 34 1 303 IPR052483 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER)
HCH7g0262 326 MobiDBLite consensus disorder prediction 118 191 - -
HCH7g0262 326 FunFam Basic leucine zipper 61 192 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0779 HCH-Chr4:5022896 HCH7g0262 HCH-Chr7:1824321 8.70E-09 dispersed
HCH7g0262 HCH-Chr7:1824321 HCH7g0514 HCH-Chr7:3901214 2.40E-09 dispersed
HCH12g1035 HCH-Chr12:7690609 HCH7g0262 HCH-Chr7:1824321 3.10E-49 transposed
HCH1g1172 HCH-Chr1:59036305 HCH7g0262 HCH-Chr7:1824321 1.50E-12 transposed
HCH2g1005 HCH-Chr2:53289114 HCH7g0262 HCH-Chr7:1824321 1.50E-09 transposed
HCH2g0709 HCH-Chr2:50833662 HCH7g0262 HCH-Chr7:1824321 6.60E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33840 PF07716 bZIP_2 3.50E-09 CL0018 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0262 - - - 0.0