Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH7g0286 | ATGGAAAAGAACATGTCTGATCAAGAACAAGCAGCTATTTCCAATGAATTCTTCCATAACATCCCATTAGCTGGATCCAACCTTAATCCTCTCATGAAGAAGAAGAAGAGAAACCTCCCTGGAAATCCAGATCCTGAAGCTGAAGTCTTGGCCTTATCACCAAAGACCCTAATGGCAACAAACAGATTCTTGTGTGAAATATGTGGGAAGGGTTTCCAGAGAGATCAAAACCTACAGCTTCATAGGCGTGGACATAACCTTCCATGGAAACTGAAGCAAAGAAGCAGCAGTAGCGAGTCGAAAAAACGAGTTTACGTCTGCCCTGAGAAGACTTGTGTCCATCATCATCCTTCTAGGGCGCTTGGAGACCTAACTGGAATAAAGAAACACTTTTGCAGGAAGCATGGGGAGAAGAAATGGAAGTGTGAGAAATGCTCTAAGAGATATGCTGTGCAGTCAGATTGCAAAGCTCACTCCAAAACTTGTGGCACTAAAGAGTATAAATGCGAATGTGGAACTCCATTTTCACGGAGAGATAGCTTTGTAACTCACAGGGCCTATTGCGTGGCATTAGCAGAAGAAACAGCAAGGCTAAATGCAACATCAAGCTGCATGGCCACAGCTGATAATATCAATCATCATTTCTTTGGAACTTCCCTAAATTCAAGCTGCATTCCCCAGCAATATTTCTCCCCTTCCACTATTTTCAGGCCAGCCTCGAGCTGCAATTATACCAATGAAAACGAAGTGATACCGATGAATCAAACCACTAGATCAGGACTTCCCTTTTGGATGGCTCAAGGACTATTTCCTCAGCAAATTACCAATGAATTAGCAGTGATCAATAAGAACATAAACGGGAACAATCACCAACTTTCAGCAGCAGGCCATCTACTTTCCTCCAGCTCAAATCAGCTGTTTTGTACTGTTCCTTCATTGTACAGCAACCAAGAGCAGACCCATCAAATGGCTCGAGCCGTAGCGACGGCAACGGCGAACATGTCGGCCACGGTATTGTTGCAAAAGGCTGCTCAGATTGGGGTAACTAGTTCAACTGAGCCATCATTGCTCTTCAAGTTCAGTAATGATCGTGGAAATGGATTGTTTTCTGGTTTTTATGGTTCAAATTCTAACTCCATTCCAAGTTCTAGTATTGACAATGGTGTGGAAGATTCTGCTGCAAGCAATCTGTTCCAAATGTATCCTCCTCCTGCCAAGCGCAGACACACAATGAGTGAAGAGAGTGTCTCAGGAGAAACCAGGGATTTTCTTGGTGTGGGTGCACACACCATATGCCATCCATCAACAATTAATGGATGGATCTGA | 1326 | 43.67 | MEKNMSDQEQAAISNEFFHNIPLAGSNLNPLMKKKKRNLPGNPDPEAEVLALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSSSESKKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDCKAHSKTCGTKEYKCECGTPFSRRDSFVTHRAYCVALAEETARLNATSSCMATADNINHHFFGTSLNSSCIPQQYFSPSTIFRPASSCNYTNENEVIPMNQTTRSGLPFWMAQGLFPQQITNELAVINKNINGNNHQLSAAGHLLSSSSNQLFCTVPSLYSNQEQTHQMARAVATATANMSATVLLQKAAQIGVTSSTEPSLLFKFSNDRGNGLFSGFYGSNSNSIPSSSIDNGVEDSAASNLFQMYPPPAKRRHTMSEESVSGETRDFLGVGAHTICHPSTINGWI | 441 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2016471 | 2018548 | + | evm.model.ptg000013l.286 | HCH7g0286 | 547571 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH7g0286 | 441 | SUPERFAMILY | beta-beta-alpha zinc fingers | 62 | 160 | IPR036236 | - | |
HCH7g0286 | 441 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 63 | 85 | IPR013087 | - | |
HCH7g0286 | 441 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 166 | 202 | - | - | |
HCH7g0286 | 441 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 65 | 85 | IPR013087 | - | |
HCH7g0286 | 441 | Pfam | Zinc finger, C2H2 type | 63 | 85 | IPR013087 | - | |
HCH7g0286 | 441 | Gene3D | Classic Zinc Finger | 59 | 86 | - | - | |
HCH7g0286 | 441 | Gene3D | Classic Zinc Finger | 97 | 188 | - | - | |
HCH7g0286 | 441 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 24 | 428 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
HCH7g0286 | 441 | FunFam | protein indeterminate-domain 12-like | 42 | 111 | - | - | |
HCH7g0286 | 441 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 101 | 135 | - | - | |
HCH7g0286 | 441 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 118 | 197 | - | - | |
HCH7g0286 | 441 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 139 | 163 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH7g0286 | HCH-Chr7:2016471 | HCH7g0854 | HCH-Chr7:23632664 | 6.80E-84 | dispersed | |
HCH2g0698 | HCH-Chr2:50767069 | HCH7g0286 | HCH-Chr7:2016471 | 3.80E-112 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33841 | None | None | None | None | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH7g0286 | K25870 | - | csv:101207997 | 466.077 |