Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0286 ATGGAAAAGAACATGTCTGATCAAGAACAAGCAGCTATTTCCAATGAATTCTTCCATAACATCCCATTAGCTGGATCCAACCTTAATCCTCTCATGAAGAAGAAGAAGAGAAACCTCCCTGGAAATCCAGATCCTGAAGCTGAAGTCTTGGCCTTATCACCAAAGACCCTAATGGCAACAAACAGATTCTTGTGTGAAATATGTGGGAAGGGTTTCCAGAGAGATCAAAACCTACAGCTTCATAGGCGTGGACATAACCTTCCATGGAAACTGAAGCAAAGAAGCAGCAGTAGCGAGTCGAAAAAACGAGTTTACGTCTGCCCTGAGAAGACTTGTGTCCATCATCATCCTTCTAGGGCGCTTGGAGACCTAACTGGAATAAAGAAACACTTTTGCAGGAAGCATGGGGAGAAGAAATGGAAGTGTGAGAAATGCTCTAAGAGATATGCTGTGCAGTCAGATTGCAAAGCTCACTCCAAAACTTGTGGCACTAAAGAGTATAAATGCGAATGTGGAACTCCATTTTCACGGAGAGATAGCTTTGTAACTCACAGGGCCTATTGCGTGGCATTAGCAGAAGAAACAGCAAGGCTAAATGCAACATCAAGCTGCATGGCCACAGCTGATAATATCAATCATCATTTCTTTGGAACTTCCCTAAATTCAAGCTGCATTCCCCAGCAATATTTCTCCCCTTCCACTATTTTCAGGCCAGCCTCGAGCTGCAATTATACCAATGAAAACGAAGTGATACCGATGAATCAAACCACTAGATCAGGACTTCCCTTTTGGATGGCTCAAGGACTATTTCCTCAGCAAATTACCAATGAATTAGCAGTGATCAATAAGAACATAAACGGGAACAATCACCAACTTTCAGCAGCAGGCCATCTACTTTCCTCCAGCTCAAATCAGCTGTTTTGTACTGTTCCTTCATTGTACAGCAACCAAGAGCAGACCCATCAAATGGCTCGAGCCGTAGCGACGGCAACGGCGAACATGTCGGCCACGGTATTGTTGCAAAAGGCTGCTCAGATTGGGGTAACTAGTTCAACTGAGCCATCATTGCTCTTCAAGTTCAGTAATGATCGTGGAAATGGATTGTTTTCTGGTTTTTATGGTTCAAATTCTAACTCCATTCCAAGTTCTAGTATTGACAATGGTGTGGAAGATTCTGCTGCAAGCAATCTGTTCCAAATGTATCCTCCTCCTGCCAAGCGCAGACACACAATGAGTGAAGAGAGTGTCTCAGGAGAAACCAGGGATTTTCTTGGTGTGGGTGCACACACCATATGCCATCCATCAACAATTAATGGATGGATCTGA 1326 43.67 MEKNMSDQEQAAISNEFFHNIPLAGSNLNPLMKKKKRNLPGNPDPEAEVLALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSSSESKKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDCKAHSKTCGTKEYKCECGTPFSRRDSFVTHRAYCVALAEETARLNATSSCMATADNINHHFFGTSLNSSCIPQQYFSPSTIFRPASSCNYTNENEVIPMNQTTRSGLPFWMAQGLFPQQITNELAVINKNINGNNHQLSAAGHLLSSSSNQLFCTVPSLYSNQEQTHQMARAVATATANMSATVLLQKAAQIGVTSSTEPSLLFKFSNDRGNGLFSGFYGSNSNSIPSSSIDNGVEDSAASNLFQMYPPPAKRRHTMSEESVSGETRDFLGVGAHTICHPSTINGWI 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2016471 2018548 + evm.model.ptg000013l.286 HCH7g0286 547571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0286 441 SUPERFAMILY beta-beta-alpha zinc fingers 62 160 IPR036236 -
HCH7g0286 441 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
HCH7g0286 441 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 166 202 - -
HCH7g0286 441 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
HCH7g0286 441 Pfam Zinc finger, C2H2 type 63 85 IPR013087 -
HCH7g0286 441 Gene3D Classic Zinc Finger 59 86 - -
HCH7g0286 441 Gene3D Classic Zinc Finger 97 188 - -
HCH7g0286 441 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 428 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH7g0286 441 FunFam protein indeterminate-domain 12-like 42 111 - -
HCH7g0286 441 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 101 135 - -
HCH7g0286 441 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
HCH7g0286 441 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 139 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0286 HCH-Chr7:2016471 HCH7g0854 HCH-Chr7:23632664 6.80E-84 dispersed
HCH2g0698 HCH-Chr2:50767069 HCH7g0286 HCH-Chr7:2016471 3.80E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33841 None None None None HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0286 K25870 - csv:101207997 466.077