Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0287 ATGCCACCCCTCTTCTTCTTCCTCCTCCTCTTCCCACTCTTCACTTTCTCACTAAACCAAGAAGGTCTCTACCTTCAGCAACTAAGTGTTTCTCTCTCTGACCCAACAAACTCTCTCTCCTCCTGGAACCCTCTCCACTCCACTCCATGCAACTGGTCAGGAATCCAATGCCACCCCATTTCTCACTCAGTCATTTCCATAGACCTCTCCAGTTTTCAACTCTCTGGCCCTTTCCCTTCTTTCCTCTGCCACCTCCCTTCTCTCTCTTCCCTTTCTCTCTCCAACAATGCCATCAATTCCTCTCTCCCTCACTCCATCTCCTCTTGCCAATCCCTCCAATCCCTCAACCTGTCTCAGAATCTCCTCGTTGGGTCTATCCCAGATTCTCTTTCTAAACTCCCTAATCTCCTCACTCTTGATCTCTCCGGAAACAACTTTTCCGGCGACGTTCCGGTCGCTTTCGGTGGCTTTCGGAGTCTCGAAACGCTTAATTTGGTTGGAAATTTGTTAAATGGGGTTCTTCCGGATTGTCTTGGGAGTATTTTGAGCTTGAAAAAGCTTCAACTTGCTTACAATCCGTTTTTGCCGACTGAGATTCCGGGGTCGTTTTGTAATTTAACGAACTTGGAGGATCTTTGGCTCGGTAATTGTAATATCGTTGGTCGGATTCCGACAGGGTTTGGTCGGATGAGACAACTTAAAAATCTTGACTTGTCTAATAATAGGCTTATTGGGTTCATTCCTAATTTTATCGTTGAAATGAAAAGTTTAGTTCAAATTGAACTGTTTAATAACTCTTTATCAGGTGAGTTGCCGTTCGGGTTCTCGAATTTAACTGCATTGCGGCGAATCGATTTTTCGATGAATCAGTTAAGTGGGAGGATTCCTGGTGAGTTGTGTGCATTGCAACTTGAGTCATTGAATTTGTATGAGAATAGATTTGAAGGGTATTTGCCTGAGAGTATTGTTGAGTCTCCTTATTTGTATGAATTGAAGTTGTTTAACAATAAGCTTAGTGGGGAGTTACCTAGTAATCTCGGTAGGAATTCTCCGTTGAGGTATCTTGATGTTTCTTACAATGGATTTTCGGGTGGGATTCCGGAATATTTGTGTGCTAAAGGGGCATTGGAAGAGCTTATTTTGATTTACAATTCGTTTTCCGGGGGAATACCGATGAGTTTGGGAAAATGTAAGAGCTTGAGCCGTGTTCGAATGCGGAACAATGAGCTTTTGGGTGTTGTTCCTAATGAGTTCTGGGGATTGCCAAATGTGTACTTGCTTGAGCTTGTAGAGAACTCGTTATCTGGATCGATTTCTTCGATGATATCGAGTGCTAAGAATCTCTCGATTTTGAAGATTTCTGCAAACCGATTTTCTGGGCCGATTCCAGATGAAATTGGGTCATTAAGCAATTTAACGGAGTTTTCAGGCAGTGATAATGAGCTTACGGGTCGAATTCCGGGAACTTTGGTTAAGTTAAGCCTGTTGGGAAAACTTGATCTCAGCGAGAATGAACTTTCGGGCGAATTACCGGTCGGGATCAGAGCTTTGAAAAGGCTTAACGAGCTTAATCTGGCAAACAACAAGCTATCTGGAAACATCCCAAGTGAAATTGGAAGCTTACCTGTGCTTAATTATCTCGATCTCTCCAGTAACAATTTTAGCGGAAGTATACCTCTTGAATTGCAGAATTTGAAATTGAATTTACTAAATTTATCTAACAATCTCTTATCAGGAGACCTTCCTCCTCTTTATGCTGAGGAGATTTACAGAAGTAGCTTTTTGGGTAATCCAGGCTTGTGTAATGACCTCCCGGGTCTTTGTCCTCGCGTCGGAAAAGGCAAAAACCATGATTACTTATGGCTTTTTAGATCGATTTTTCTGCTTGCTATGCTTGTTTTCATTGTTGGGGTCATTTGGTTCTACTTCAAATACAAGGAATTCAAGAAGAACAAGAAAGGAGTTGCCATTTCCAAATGGAGATCGTTCCATAGACTTGGTTTCAGTGAATATGAAGTTGCAGACTGTCTCAATGAAGATAAAGTCATCGGAAGTGGAGCTTCTGGCAAAGTTTACAAAGTAGTACTTAGAAACGGCGACGTAGTGGCCGTGAAGAAGCTCTGGGTAGGAGCGAAGAAAGAGGATACTAGTTTTGATATAGAGAAAGATGGATTTGAGGCTGAAGTTGAGACTTTGGGGAGGATCCGCCATAAGAATATTGTAAGGTTGTGGTGCTGCTGCAATACTGGGAATTGCAAGTTACTGGTTTATGAGTATATGCCAAATGGGAGCTTAGGAGATTTGTTACATGGCGGCAGGAAAAGGTTTTTGGATTGGCCAACAAGGTATAAAGTGGCTCTGGATGCAGCTGAAGGGCTTTCTTACTTGCATCATGACTGTGCTCCTCCGATCGTTCACAGGGATATCAAGTCCAACAATATATTACTGGACTCTGAGTTTGGAGCTAGAGTTGCAGATTTTGGAGTAGCCAAGTTTTTGAAAGCTGGTAAAGGCTCAGAGTCAATGTCGGTCATTGCTGGTTCTTGCGGTTACATTGCACCAGAATACGCCTATACTCTAAGAGTAAACGAGAAGAGTGACATCTACAGCTTCGGAGTGGTGATTTTAGAGCTGGTGACCGGCCGGCCACCAAACGATCCACAATTCGGAGAAAAAGGCTTTGCAAAGTGGGTTTTCGCCACCATCGACCGTAAAGGAGTCGACCAAGTGATCGATCCCAAACTTGGTTCCGATCACAGGAACGAAATCTGCCGAGTCCTCGAGGTAGGTATGGTCTGCACTAGCTCGCTTCCCATGAACCGCCCTTCAATGAGAAGGGTGGTCAAACTACTGCAAGAGGCTGGTTCAGAACTCAGGTCCAACTTTGAAGGCTCTACAAATTGA 2904 43.49 MPPLFFFLLLFPLFTFSLNQEGLYLQQLSVSLSDPTNSLSSWNPLHSTPCNWSGIQCHPISHSVISIDLSSFQLSGPFPSFLCHLPSLSSLSLSNNAINSSLPHSISSCQSLQSLNLSQNLLVGSIPDSLSKLPNLLTLDLSGNNFSGDVPVAFGGFRSLETLNLVGNLLNGVLPDCLGSILSLKKLQLAYNPFLPTEIPGSFCNLTNLEDLWLGNCNIVGRIPTGFGRMRQLKNLDLSNNRLIGFIPNFIVEMKSLVQIELFNNSLSGELPFGFSNLTALRRIDFSMNQLSGRIPGELCALQLESLNLYENRFEGYLPESIVESPYLYELKLFNNKLSGELPSNLGRNSPLRYLDVSYNGFSGGIPEYLCAKGALEELILIYNSFSGGIPMSLGKCKSLSRVRMRNNELLGVVPNEFWGLPNVYLLELVENSLSGSISSMISSAKNLSILKISANRFSGPIPDEIGSLSNLTEFSGSDNELTGRIPGTLVKLSLLGKLDLSENELSGELPVGIRALKRLNELNLANNKLSGNIPSEIGSLPVLNYLDLSSNNFSGSIPLELQNLKLNLLNLSNNLLSGDLPPLYAEEIYRSSFLGNPGLCNDLPGLCPRVGKGKNHDYLWLFRSIFLLAMLVFIVGVIWFYFKYKEFKKNKKGVAISKWRSFHRLGFSEYEVADCLNEDKVIGSGASGKVYKVVLRNGDVVAVKKLWVGAKKEDTSFDIEKDGFEAEVETLGRIRHKNIVRLWCCCNTGNCKLLVYEYMPNGSLGDLLHGGRKRFLDWPTRYKVALDAAEGLSYLHHDCAPPIVHRDIKSNNILLDSEFGARVADFGVAKFLKAGKGSESMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRPPNDPQFGEKGFAKWVFATIDRKGVDQVIDPKLGSDHRNEICRVLEVGMVCTSSLPMNRPSMRRVVKLLQEAGSELRSNFEGSTN 967
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2022882 2026308 - evm.model.ptg000013l.287 HCH7g0287 547572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0287 967 SUPERFAMILY RNI-like 66 409 - -
HCH7g0287 967 Gene3D Phosphorylase Kinase; domain 1 658 759 - -
HCH7g0287 967 Gene3D Transferase(Phosphotransferase) domain 1 760 964 - -
HCH7g0287 967 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g0287 967 SUPERFAMILY L domain-like 376 601 - -
HCH7g0287 967 ProSitePatterns Protein kinases ATP-binding region signature. 683 706 IPR017441 GO:0005524(InterPro)
HCH7g0287 967 Pfam Leucine rich repeat N-terminal domain 18 57 IPR013210 -
HCH7g0287 967 Gene3D Ribonuclease Inhibitor 17 196 IPR032675 -
HCH7g0287 967 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 18 181 - -
HCH7g0287 967 Pfam Protein kinase domain 679 890 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0287 967 Pfam Leucine rich repeat 127 170 IPR001611 GO:0005515(InterPro)
HCH7g0287 967 Gene3D Ribonuclease Inhibitor 197 302 IPR032675 -
HCH7g0287 967 Gene3D Ribonuclease Inhibitor 303 609 IPR032675 -
HCH7g0287 967 FunFam Receptor-like protein kinase HSL1 303 610 - -
HCH7g0287 967 SMART serkin_6 677 944 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0287 967 FunFam Receptor-like protein kinase HSL1 660 759 - -
HCH7g0287 967 ProSiteProfiles Protein kinase domain profile. 677 962 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0287 967 Pfam Leucine Rich Repeat 352 371 IPR001611 GO:0005515(InterPro)
HCH7g0287 967 Pfam Leucine Rich Repeat 544 565 IPR001611 GO:0005515(InterPro)
HCH7g0287 967 Pfam Leucine Rich Repeat 232 251 IPR001611 GO:0005515(InterPro)
HCH7g0287 967 Pfam Leucine Rich Repeat 447 469 IPR001611 GO:0005515(InterPro)
HCH7g0287 967 Pfam Leucine Rich Repeat 208 230 IPR001611 GO:0005515(InterPro)
HCH7g0287 967 Pfam Leucine Rich Repeat 87 109 IPR001611 GO:0005515(InterPro)
HCH7g0287 967 Pfam Leucine Rich Repeat 281 302 IPR001611 GO:0005515(InterPro)
HCH7g0287 967 Pfam Leucine Rich Repeat 520 541 IPR001611 GO:0005515(InterPro)
HCH7g0287 967 SMART LRR_typ_2 157 180 IPR003591 -
HCH7g0287 967 SMART LRR_typ_2 133 156 IPR003591 -
HCH7g0287 967 SMART LRR_typ_2 230 254 IPR003591 -
HCH7g0287 967 SMART LRR_typ_2 206 229 IPR003591 -
HCH7g0287 967 SMART LRR_typ_2 85 109 IPR003591 -
HCH7g0287 967 SMART LRR_typ_2 278 302 IPR003591 -
HCH7g0287 967 SMART LRR_typ_2 493 516 IPR003591 -
HCH7g0287 967 SMART LRR_typ_2 517 541 IPR003591 -
HCH7g0287 967 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 14 954 IPR050647 -
HCH7g0287 967 FunFam Leucine-rich receptor-like protein kinase family protein 199 298 - -
HCH7g0287 967 SUPERFAMILY Protein kinase-like (PK-like) 671 951 IPR011009 -
HCH7g0287 967 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 760 966 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0739 HCH-Chr11:35953075 HCH7g0287 HCH-Chr7:2022882 1.20E-83 dispersed
HCH3g0677 HCH-Chr3:4775996 HCH7g0287 HCH-Chr7:2022882 7.20E-158 dispersed
HCH7g0287 HCH-Chr7:2022882 HCH8g0699 HCH-Chr8:43721223 4.50E-80 dispersed
HCH14g0944 HCH-Chr14:36975423 HCH7g0287 HCH-Chr7:2022882 4.50E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81625 PF00069 Pkinase 1.40E-43 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0287 - - - 0.0