Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH7g0326 | ATGGTTTCTTTGGGGGACCATGCTGATAATGAAGTTGATTCTGATAAATTGGAGCATGAACTCAGTTCAGACAGTCAACCACAAGTATCTCAGGAGGTTCCTGGTGGAATTAATGAGTCGAAATCAGATCAGAAATGCACTGCCACTGCCACTGCCACTAAGCCACTTGAAGTACCTGTGAAGCAGCCTGATGCTTCAATAGAACAGTTGGAGAAAGAAGGAAGCATCTCCATTATAGCAACTGAGAAAATCATCTATAACCCAATTCCATTGGACCAGTATCCACATTCTGATTTGAAAGGAAGTTCTACTTCTATTATACGAGAGAAAGTTTCAGAGGATGGATATAACTGGCGGAAATATGGTCAGAAACTGGTAAAGGGGAGCACCTTTGTACGAAGCTATTACAGATGCACACATCCAACTTGCATAGTGAAAAAACAACTGGAGCGTACCCATAGTGGGAAACTTACAGATACAGTTTACTTTGGTCAGCACGATCATGCTAAACCTCAACCTCATGTCCCAGTTACTGTTGGAGTTACCGTGGTTGAAGAAAAACGAGATGAGCATACTTCTGGAAGTTCTCAAGATAAAATCACCACTGCCCTTGGCCAGACACCTCATCAAACTGAGCCAATTGATGTGCTTCAACGGTCAACTGTCACGGCTAATGGTAATGTAAAAGATGAAACTTTAAAAAGGTCTAGAATCAGTGAAGAGGTTGATAGTGATGATGTTCCAGACTTGAAACGAGAGAAGAAAAGATGTTGCAATATTGACGTGACAGTAGCAGACAAGTCAACAATTGAACCTCGAGTTGTTGTTCAAACTCCCAGTGAGGTGGACATTGTTAATGATGGTTACCGCTGGCGAAAGTATGGACAGAAACTAGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCGAGTCCCGGATGTCCGGTTAAGAAACACGTAGAGAGGGCATCACATGATCCAAAAGTTGTACTTACCACGTATGAGGGTCAGCATGACCACGATATGCCTCCTGCAAGGACAGTGACATTGAACCCAGTTGGGCCTGGCATTTGCACATCAGTTCATAATAGCGAGATAGGATCGAAATCGGACGGTAGTTCCATTAGCCATGATATGGTGGTTCGTACTAGTTCGGATTCTCGAGGCAACTCAAGTTCTGAAGGTAATTTAATTGAAAAGAAGCATGCCACAGAAACAAGTGATGGCATTGTCCTCGACATGATGATAAAATCCAGTCCAGGTGTTGTGAGTGAACAACAAAATCAGCAGCTGAAGGTAGCAATTGAAAGCTAA | 1320 | 42.8 | MVSLGDHADNEVDSDKLEHELSSDSQPQVSQEVPGGINESKSDQKCTATATATKPLEVPVKQPDASIEQLEKEGSISIIATEKIIYNPIPLDQYPHSDLKGSSTSIIREKVSEDGYNWRKYGQKLVKGSTFVRSYYRCTHPTCIVKKQLERTHSGKLTDTVYFGQHDHAKPQPHVPVTVGVTVVEEKRDEHTSGSSQDKITTALGQTPHQTEPIDVLQRSTVTANGNVKDETLKRSRISEEVDSDDVPDLKREKKRCCNIDVTVADKSTIEPRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKVVLTTYEGQHDHDMPPARTVTLNPVGPGICTSVHNSEIGSKSDGSSISHDMVVRTSSDSRGNSSSEGNLIEKKHATETSDGIVLDMMIKSSPGVVSEQQNQQLKVAIES | 439 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 2339749 | 2341497 | + | evm.model.ptg000013l.326 | HCH7g0326 | 547611 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH7g0326 | 439 | ProSiteProfiles | WRKY domain profile. | 107 | 171 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH7g0326 | 439 | Gene3D | WRKY domain | 101 | 172 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH7g0326 | 439 | SMART | WRKY_cls | 285 | 344 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH7g0326 | 439 | SMART | WRKY_cls | 112 | 170 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH7g0326 | 439 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
| HCH7g0326 | 439 | MobiDBLite | consensus disorder prediction | 8 | 22 | - | - | |
| HCH7g0326 | 439 | Pfam | WRKY DNA -binding domain | 113 | 168 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH7g0326 | 439 | Pfam | WRKY DNA -binding domain | 286 | 343 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH7g0326 | 439 | FunFam | WRKY transcription factor 57 | 271 | 345 | - | - | |
| HCH7g0326 | 439 | MobiDBLite | consensus disorder prediction | 384 | 399 | - | - | |
| HCH7g0326 | 439 | MobiDBLite | consensus disorder prediction | 23 | 51 | - | - | |
| HCH7g0326 | 439 | SUPERFAMILY | WRKY DNA-binding domain | 108 | 171 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH7g0326 | 439 | MobiDBLite | consensus disorder prediction | 384 | 408 | - | - | |
| HCH7g0326 | 439 | ProSiteProfiles | WRKY domain profile. | 280 | 345 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH7g0326 | 439 | Gene3D | WRKY domain | 272 | 338 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH7g0326 | 439 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 18 | 351 | IPR044810 | GO:0003700(InterPro) | |
| HCH7g0326 | 439 | FunFam | WRKY transcription factor | 102 | 172 | - | - | |
| HCH7g0326 | 439 | SUPERFAMILY | WRKY DNA-binding domain | 277 | 345 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH6g0924 | HCH-Chr6:44014255 | HCH7g0326 | HCH-Chr7:2339749 | 6.30E-58 | dispersed | |
| HCH7g0326 | HCH-Chr7:2339749 | HCH8g0932 | HCH-Chr8:45626758 | 1.30E-42 | dispersed | |
| HCH7g0326 | HCH-Chr7:2339749 | HCH13g0701 | HCH-Chr13:5721942 | 4.00E-60 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 33844 | PF03106 | WRKY | 2.90E-26 | CL0274 | HCH | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH7g0326 | K18834 | - | csv:101212482 | 546.584 |