Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0328 ATGTCTCAAAATTCTAAGTTGTCTTGTTGTAAGATTAGATTGCCTGCTGGTTGTAAAGTGAAGAGGGTGAAGGAGCATTTCCATGGGGAAGGGTGGAGTGACCTTCTTCATTACTTGCTTTTAGGTGTAATTTTAGTCTTGGGATTTTGGTCTTTTTTTAGTCTTATTGGTGAGAATTCAGCTAGGAAAGTAGAGATATCAGTTAATTGCCAAGAGAAAGCTAGAAACTTGCTGCAGCATTTCAATGTTAGTAAGAGTCAACTTCATGCTCTGGCTTCCTTCTTCTCTCACTCAGATCAGACAGCATCCCTTCAGTGTGCTAAAGATCCAGGACCTGGCATTGCACTGAAAGATTGCATTGCTTGTGCTTTGAAGATATTTGAAGAGGAGCAACACTTGCAAAAGCAGCGAGGATGGCTTTCAGAAGATTTAGAATCTGAAGGGCAGTGTCTAATTTCGGATAAGACGGACCCCATCAATTTTGATCTGTTTCACCTAATGGATAAGACTCATTCATTTGCTTCACAATCTCTATTTGCATTGGTGTCTTCAAGTCATCAGATTCAAAGAGAGATCCTGCAAACTAGGGAAATTAGAAATGAGCGTTGTGGAAGTTCGAATGGTTTGGTTCTGGGGTGCTTATGGATCCTTGCTGTAGTGATGTCATGCCTGAAGATGTCTAGTTTTCATTTGAAACTGAGGAACCATAAAAACAAGCCAATGAAGCATCCATCTGGTGGGCAACAGCCAGTGATCCAGCTGCGCCAGGTATTACTTCAGCAGAAGCAGTCAAATCCATCCCCGAGTTCTAAAGGGGCTGGGAAATGGAGAAAGAAGCTTCTTTTAATATTTGTATTACTTGGGTTTATCACATCCATTTGGCTCTTTTGGTATTTGAATAACAAAATCATCTTGAGGAGGAAAGAAATGCTTGCCAATATGTGTGACGAACGAGCACGAATGTTACAGGATCAATTCAACGTTAGCATGAACCATGTTCATGCCTTGGCTATTCTAGTATCCACCTTTCATCATGGAAAGAATCCTTCTGCAATTGACCAGAAAATATTCAGTGAATATGCAGAAAGAACAGCTTTTGAGAGACCACTAACCAGTGGTGTGGCTTATGCTTTGAAAGTTAATCATTCAGAAAGAAAGCAATTTGAAGAAAAGCATGGGTGGACAATTAAGAAGATGGGAACAGAGGACCAGACTCTTGTTCAGGATTGTATTCCTGAGAATTTGGATCCTGCTCCTTTGCAGGATGAATATGCACCTGTAATATTTTCCCAAGAAACCGTATCGCATATAGTTTCTATTGACATGATGTCTGGAAAGGAAGACCGTGAAAATATCTTGCGAGCAAGGGCTTCAGGGAAGGGAGTGCTGACTTCTCCTTTCAAGCTTCTCAAGTCCAATCACCTAGGCGTCGTACTCACTTTTGCTGTCTATAACATTGACCTTCCTCCTGATGCAACACCAGAGGAACGTATCGAAGCAACTGTTGGGTATCTAGGAGCTTCCTATGATATCCCATCATTGGTGGACAAACTTCTGCACCAACTTTCCAGTAAACAATCGATTATTGTTAATGTTTACGATACGACTAATGCATCAGCTCACATTAAGATGTATGGATCTGATGTGATTGACACTGGTCTATTGCGCATTAGCAACTTGGACTTTGGAGATCCACTAAGGAAGCATGAGATGCATTGCAGATTCAAGGAGAAACCTCATCTACCATGGATGGCTATAAATGCATCAGTGGGAGTCCTGGTCATTACTTTACTTGTTGGCCATATCTTTTATGCAGCCATAAGTCGAATTGCAAAAGTGGAGAATGACTATTGTAAGATGATGGAACTCAAAATTCGTGCCGAAGCTGCAGATGTGGCCAAGTCTCAGTTTCTTGCAACCGTTTCTCATGAGATCAGGACACCTATGAATGGTGTTTTAGGAATGCTGAAAATGCTGATGGGCACTGATCTTGATCCAAAGCAAATGGATTATGCTCAGACTGCGTACGATAGCGGGAGAGAATTAATATCACTAATAAATGAGGTTCTTGATCAGGCTAAAATAGAATCAGGAAAGCTCGAACTTGAAGATGTACCTTTTGATCCGCGTGCTTTACTCGATAATGTGCCGTCGCTGTTCTCTGGAAAATGTAATGAAAAAGGGATAGAGTTAGCTGTTTATGTCTCTAATCCGGTTCCTGAAGTTCTCATTGGCGACCCTGGACGCTTCCGACAGATAATTACCAATCTTGTGGGAAATTCAATCAAGTTCACCAATGACAAAGGACACATATTTATCACTCTACACCTGGCAGATGAAGTGAGGACTCGACTTGATGTAATGGACAAAGTGCTAAAACAAGGTTTAAATTTAGTTCAAGAAATGCCAATAAAAAATCATAGTACATTAAGTGGGTTTCCAGTGGTTGATAGGTGCAAGAGTTGGGAGCACTTCAAGATATTTAGTAGAACAGATGCAATGCAGGAACAGGACTTGGTTAAATTACTTGTATCAGTTGAGGATACTGGTCATGGAATTCCTTTAGAAGCGCAAAGTCGAATTTTCACTCCGTTTATGCAAGCTGATAGTTCTACTTCACGCAAGTACGGTGGGACAGGAATCGGTTTGAGCATTAGTAAATGTCTGGTGGATTTAATGGGTGGGGAGATAGGTTTTGTAAGCGAACCCGGCATCGGCAGCACATTTTCATTTACTGGATGTTTAAGTAAAGGAGATATGAAATCTGTCGATACTAAGTCGCAGCAGTACGATCCAGCCATATTAGAGTTCCAAGGATTGCAGGCATTGGTGATAGATAATAGAAGCATTAGAGCTGTGGTCACAAAATATCATCTCCTGAGGTTAGGGATCTCTGTGGATGTAATTTCAAGTATGGTTTCAGCAGATGAATATTTGTCCAATATTTACATCAAAAGTGCATCCAAGCCTTTGGCCATGATTCTTATTGAGAAAGATGTTTGGAATATGGAAACTGGTCTTAAAATCCGCCGTTCATTTAAAGAGCACGGGGGAAATGGCAATGGAGAATCAATAGAATGTCCTAAGATCTTTCTCTTAGCTACCTCCATCAGCCCTCAAGAGATCAGTGATCTCAAGTCCACTGGCTATGTCAATAATGTATTGATAAAACCTCTTAGGCTGGGTGTCTTGACCAGCTGCTTTCAGGAAGCCCTTGGAAATGGCAAGCATAGAAAGAAACCATCTATTCTTGGGACATTGCTGAGAGAAAAGCATATATTGGTGGTCGATGATAATGCGGTTAATAGAAGAGTTGCAGAAGGTGCTCTAAAGAAATATGGAGCAAAGGTTACCTGTGTGGAAAGTGGTAGAGCTGCTCTTTCATTGTTATATCCACCACACAAATTTAGTGCTTGTTTCATGGATCTTCAGATGCCTGAGATGGATGGATTTGAAGCAACGCGACAGATACGGAATATCGAAAATAAGGTTAATGAAGACATTGCTTCTGGGATAGCATCAGCTGAGATGTTTGGGAATGTGGTTCGTTGGCACACACCAGTATTGGCCATGACAGCTGATGTAATTCAGGCTACAAATGAAGCATGCATGAAATGTGGGATGGATAGCTATGTCTCAAAGCCTTTTGAAGAAGAGCAATTATATTCAGCCGTAGCACGTTTCTTTGAATCCGAAAACGGAGAACATTAA 3711 41.07 MSQNSKLSCCKIRLPAGCKVKRVKEHFHGEGWSDLLHYLLLGVILVLGFWSFFSLIGENSARKVEISVNCQEKARNLLQHFNVSKSQLHALASFFSHSDQTASLQCAKDPGPGIALKDCIACALKIFEEEQHLQKQRGWLSEDLESEGQCLISDKTDPINFDLFHLMDKTHSFASQSLFALVSSSHQIQREILQTREIRNERCGSSNGLVLGCLWILAVVMSCLKMSSFHLKLRNHKNKPMKHPSGGQQPVIQLRQVLLQQKQSNPSPSSKGAGKWRKKLLLIFVLLGFITSIWLFWYLNNKIILRRKEMLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKIFSEYAERTAFERPLTSGVAYALKVNHSERKQFEEKHGWTIKKMGTEDQTLVQDCIPENLDPAPLQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNIDLPPDATPEERIEATVGYLGASYDIPSLVDKLLHQLSSKQSIIVNVYDTTNASAHIKMYGSDVIDTGLLRISNLDFGDPLRKHEMHCRFKEKPHLPWMAINASVGVLVITLLVGHIFYAAISRIAKVENDYCKMMELKIRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMGTDLDPKQMDYAQTAYDSGRELISLINEVLDQAKIESGKLELEDVPFDPRALLDNVPSLFSGKCNEKGIELAVYVSNPVPEVLIGDPGRFRQIITNLVGNSIKFTNDKGHIFITLHLADEVRTRLDVMDKVLKQGLNLVQEMPIKNHSTLSGFPVVDRCKSWEHFKIFSRTDAMQEQDLVKLLVSVEDTGHGIPLEAQSRIFTPFMQADSSTSRKYGGTGIGLSISKCLVDLMGGEIGFVSEPGIGSTFSFTGCLSKGDMKSVDTKSQQYDPAILEFQGLQALVIDNRSIRAVVTKYHLLRLGISVDVISSMVSADEYLSNIYIKSASKPLAMILIEKDVWNMETGLKIRRSFKEHGGNGNGESIECPKIFLLATSISPQEISDLKSTGYVNNVLIKPLRLGVLTSCFQEALGNGKHRKKPSILGTLLREKHILVVDDNAVNRRVAEGALKKYGAKVTCVESGRAALSLLYPPHKFSACFMDLQMPEMDGFEATRQIRNIENKVNEDIASGIASAEMFGNVVRWHTPVLAMTADVIQATNEACMKCGMDSYVSKPFEEEQLYSAVARFFESENGEH 1236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2343186 2350776 - evm.model.ptg000013l.328 HCH7g0328 547613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0328 1236 PRINTS Bacterial sensor protein C-terminal signature 901 914 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH7g0328 1236 PRINTS Bacterial sensor protein C-terminal signature 842 856 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH7g0328 1236 PRINTS Bacterial sensor protein C-terminal signature 860 870 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH7g0328 1236 PRINTS Bacterial sensor protein C-terminal signature 877 895 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH7g0328 1236 CDD HATPase_EvgS-ArcB-TorS-like 750 915 - -
HCH7g0328 1236 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 840 912 IPR003594 -
HCH7g0328 1236 Gene3D CHASE domain 352 579 IPR042240 -
HCH7g0328 1236 SMART HKATPase_4 745 917 IPR003594 -
HCH7g0328 1236 SMART REC_2 1091 1225 IPR001789 GO:0000160(InterPro)
HCH7g0328 1236 Pfam CHASE domain 351 545 IPR006189 -
HCH7g0328 1236 Gene3D - 1086 1233 - -
HCH7g0328 1236 Gene3D - 697 917 IPR036890 -
HCH7g0328 1236 ProSiteProfiles Response regulatory domain profile. 1092 1229 IPR001789 GO:0000160(InterPro)
HCH7g0328 1236 SMART CHASE_2 348 547 IPR006189 -
HCH7g0328 1236 Pfam His Kinase A (phospho-acceptor) domain 633 698 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH7g0328 1236 CDD REC_hyHK_CKI1_RcsC-like 1093 1225 - -
HCH7g0328 1236 Pfam Response regulator receiver domain 1093 1225 IPR001789 GO:0000160(InterPro)
HCH7g0328 1236 ProSiteProfiles CHASE domain profile. 348 572 IPR006189 -
HCH7g0328 1236 SMART HisKA_10 633 698 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH7g0328 1236 FunFam Histidine kinase 4 352 579 - -
HCH7g0328 1236 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 687 912 IPR036890 -
HCH7g0328 1236 SUPERFAMILY CheY-like 1089 1230 IPR011006 -
HCH7g0328 1236 Gene3D - 605 696 - -
HCH7g0328 1236 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 621 699 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH7g0328 1236 PANTHER TWO-COMPONENT HISTIDINE KINASE 264 1228 IPR050956 -
HCH7g0328 1236 CDD HisKA 633 694 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH7g0328 1236 ProSiteProfiles Histidine kinase domain profile. 640 917 IPR005467 -
HCH7g0328 1236 Gene3D - 299 351 - -
HCH7g0328 1236 Gene3D - 58 103 - -
HCH7g0328 1236 FunFam Histidine kinase 4 605 696 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0077 HCH-Chr10:691088 HCH7g0328 HCH-Chr7:2343186 1.3e-313 transposed
HCH10g0930 HCH-Chr10:12388316 HCH7g0328 HCH-Chr7:2343186 4.90E-33 transposed
HCH10g1380 HCH-Chr10:46349571 HCH7g0328 HCH-Chr7:2343186 2.80E-279 transposed
HCH12g0444 HCH-Chr12:2574668 HCH7g0328 HCH-Chr7:2343186 5.50E-41 transposed
HCH1g0075 HCH-Chr1:6270979 HCH7g0328 HCH-Chr7:2343186 1.00E-281 transposed
HCH4g1074 HCH-Chr4:6947979 HCH7g0328 HCH-Chr7:2343186 2.00E-10 transposed
HCH7g1305 HCH-Chr7:45969910 HCH7g0328 HCH-Chr7:2343186 5.60E-09 transposed
HCH2g0666 HCH-Chr2:50453017 HCH7g0328 HCH-Chr7:2343186 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33845 PF03924 CHASE 1.80E-33 CL0165 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0328 K14489 - rcu:8273557 1578.92