Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0335 ATGGCCACCTCTGCCATCCAACACTCTGCATTTGCCGGCCAGGCCGCCTTGAAGCAATCCAATGAGCTCGTCCGAAAGGTCGGTGCCGTTGGCGGTGGCCGCTTCACCATGCGGCGGACGGTCAAGAGTGCCCCCCAAAGCATATGGTACGGCCCAGATCGCCCGAAATACTTGGGACCATTCTCTGAACAAACTCCATCTTACCTGACTGGTGAATTCCCTGGTGACTATGGATGGGATACAGCTGGTCTGTCAGCAGATCCCGAGACTTTCGCCAAGAACCGTGAGCTCGAGGTGATCCACTCCCGATGGGCCATGCTTGGTGCTTTAGGTTGCGTCTTCCCGGAAATCCTTGCAAAGAACGGTGTCAAGTTTGGTGAATCAGTTTGGTTCAAGGCTGGTTCTCAAATCTTCTCTGAGGGTGGTCTTGATTATCTTGGCAACCCCAATCTCATCCATGCCCAGAGTATCCTTGCAATCTGGGCTAGCCAGGTTGTGCTTATGGGCTTTGTTGAAGGTTACCGTATTGGTGGTGGCCCACTCGGTGAAGGATTGGACCCAATTTACCCCGGAGGTGCCTTTGACCCACTTGGATTGGCAGATGACCCAGAGGCATTTGCTGAGTTGAAGGTGAAGGAACTAAAGAATGGACGGTTGGCGATGTTCTCCGTGTTCGGATTCTTCGTCCAGGCCATCGTCACTGGAAAGGGTCCTATTGAAAATCTCTCTGACCATATTGCCGATCCTGTGGCCAACAATGCATGGGCTTATGCCACCAACTTTGTTCCTGGAAAATGA 798 52.63 MATSAIQHSAFAGQAALKQSNELVRKVGAVGGGRFTMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRIGGGPLGEGLDPIYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSVFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2374643 2375851 - evm.model.ptg000013l.335 HCH7g0335 547620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0335 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
HCH7g0335 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
HCH7g0335 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
HCH7g0335 265 Pfam Chlorophyll A-B binding protein 66 232 IPR022796 -
HCH7g0335 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0020 HCH-Chr12:146415 HCH7g0335 HCH-Chr7:2374643 1.40E-52 dispersed
HCH6g0408 HCH-Chr6:8274928 HCH7g0335 HCH-Chr7:2374643 1.20E-120 dispersed
HCH6g0711 HCH-Chr6:40515738 HCH7g0335 HCH-Chr7:2374643 4.20E-100 dispersed
HCH7g0335 HCH-Chr7:2374643 HCH8g0373 HCH-Chr8:33885483 2.70E-35 dispersed
HCH7g0335 HCH-Chr7:2374643 HCH12g1114 HCH-Chr12:8672768 4.80E-101 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0335 K08913 - csv:101212963 528.48