Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH7g0347 | ATGAGTTCGCCGCCGTCGATAAATAAGGGTCCATGTTCTTCGAGTGGCCCTGGTCCGTCGAAACATGGGGCCAATGTCGTTTCGCAGACCCCAATTGATGCGAAGCTTCATGTAGATTTTGAAGGCTCTGAAAAGTTCTTTGATTACACTGCATCAATTGATTTCAACATCCCGGGTTCAACTAGCAATGTTCATTCCTCCACTGTACAATCGTACCTTCAAAATATTCAGAGAGGAAAGCTGATTCAACCGTTTGGATGTTTGATTGCTGTCAATAAGGAAAACCTCTCGGTCCTTGCATACAGCGAAAATGCTCCAGAAATGTTGGACTTGGCTCCACATGCTGTTCCTAACATTGAGCAGAAAGAAGCCCTGACTTTTGGAACAGATGTTCGAACACTTTTTCGGTCCCCAGGTGCTGCTGCCTTACAGAAAGCAGCTGACTTTGAGGAAGTTAATCTTCTCAATCCTCTACTGGTTCATTGTAAAACTTCAGGGAAGCCATTTTATGCAATCTTGCATCGAATTGATGCAGGGTTAATCATTGATTTGGAACCAGTGAATCCAGCTGATGTGCCCGTGACTTCAGCTGGGGCATTGAAATCTTATAAGCTAGCAGCCAAAGCTATCTCAAAATTGCAGTCCTTGTCGAGTGGGAATATATCTCGTTTATGTGATGTATTGGTTAAGGAAGTTAGTGATTTGACAGGCTATGATCGGGTAATGGTGTACAAGTTTCACGAAGATGAGCATGGAGAAGTTATAGCTGAGTGCTGCCGACCTGACTTAGAATCATATCTTGGCTTGCACTACCCAGCTACTGATATACCTCAAGCTTCAAGATTCCTTTTTATGAAGAATAAAGTTAGGATTATATGTGATTGTTTAGCACCTCCTGTTAAAGTGCTGCAGGACAAGAGATTGGCTCAACCATTAAGTCTATGTGGATCTGCACTGAGGGCTCCTCATGGTTGTCATTCTCAGTATATGGTGAATATGGCTTCTATTGCATCTCTTGTGATGTCTATCACAGTCAACGAGAATGATAACGAAATGGAGAATGATGAACAAAAGGAAAGGAAGTTGTGGGGTTTAGTAGTTTGCCACCACACAACCCCCAGGTTTGTCCCATTTCCTTTGAGATATGCCTGTGAATTCTTGATTCAAGTATTTGGCATACAGATCAATAAGGAAGTGGAGTTGCAAGCCCAGTTGAAGGAAAAACACATATTGCAAATTCAAACAGTTCTTTGTGATATGCTACTAAGAGATGCACCGGTAGGAATTGTTACTCATTCTCCCAATATTATGGATCTTGTTAAGTGTGATGGTGCTGCCTTATATTACAAAACAAAGGTTTGGCTGCTTGGAGTCACCCCCACTGAGGTGCAAATTAGAGATATAACTGAATGGCTTCTCAAAGACCACAGTGGAAGCACAGGCTTAAGTACTGATAGCCTTACAGAAGCTGGTTACTTTGGTGCTTCTGCCCTTGGTGATGATGTTTGTGGAATGGCTGCTGTTAGGATTACCTCTAGGGACTTCCTTTTCTGGTTTCGGTCACATACGGCAAAAGAAATCAGGTGGGGTGGTGCAAAACACGATCCTGTTGGCACGGATGATGGAAGAAAGATGCATCCAAGATCATCATTCAAGGCTTTCCTGGAAGTGGTTAAGCAGCGTAGTCAGCCTTGGGAAGATGTGGAAATGGATGCCATCCACTCGTTGCAATTGATATTACGAGATTCTTTACAAGATGTCACAGAAGAGGAATCCAAAATGATTGCAACTGTCCCATCTGTTGATGAAAGGACACAAAGACTGAATGAATTGCGTGCCACTACAAATGAAATGGTTCGCCTATTTGAGACAGCTACAGTGCCTATCTTTGCTGTAGATGTCCTGGGCAAGATCAATGGTTGGAATTCCAAAGCAACCGAACTTACAGGATTGGCTGTCCCGCAAGCCATTGGCATGGCCTTGGTTGATGTTCTCGTGGAAGATTCAGTTAAGGTGGTAAAGGACATGCTTTCCTCCGCTATTCAAGGTATTGAAGAGAAAAATATTGAAATCAAGCTAAAAAAATATGGAACTCAAGAACCAAATGATCCGGTGATCTTAGTAGTTAACTCATGTTGTAGCCGAGACCCCAATGGTAATGTTGTAGGGGTTTGCTTTGTTGGCCAGGATGTTACTGAACAAAAGCAGATTATGAACCAATACACCCAAATCCAAGGTGACTACGCAGGAATTATGCGGAATCCATCTGCACTTATCCCTCCAATTTTTATGGCTGATGATAACGGCCGGTGCTTGGAATGGAACAATGCAATGGAAAAGTTATCTGGTTTCAAAAGGGAAGAGGCGATCAATAAGATGCTTCTTGGAGAGGTCTTTACGCTTGATGATTTTGGTTGCCATGTCAAAGAACAGACATTGACCAAGCTAAGTATACTACTGCATAGAGTATTTTCAGGCCAGGATGTTGACAGATTATTTTTTAGGTTCTTTGATCGTCAGGGAAATAATGTTGAAACATTGCTTTCTGCAAACAAAAGGACTGATGCAGAGGGAAAAATCACCGGGGTTTTCTTCTTCTTGCATGTGGCTAGTTCAGAACTTCAGTGTGCTTTGGAGATGCAGCAGATATCAGAACAAGCTACAGCCGATAGCCTCTATAAATTGGCATATCTACGTCAGGAAATTCGAAAACCTCTGGCTGCGATTACACTTATGCAGAATCTAATGGGGTCGTCTGACTTGAGTGAATATCAAAAGCAGCTACTTAAATTGAGCACTTCGAGTCGGGAACAATTGCTCAAGATTGTAGATGAAACTGACATTCAAAGTATTGAGGAAGGTTACATGGAAACAAACTGTGGTGAATTTAACCTTGAAGATGTTCTCGACGTTGTAATAAATCAAATGATGATTTTGAGCCAAGAGCGCCAGGTGATGATTGTCTCTGAATCACCTGCCGATGTGTCATCTTGGTACTTGTATGGAGATAACTTGAGGCTCCAACAGGTGCTCTCTGAGTTCTTGACTAATACACTTCTCTTCACTCGCAAAGAATCATCCGTTGTCTTCAAAATAATTCCAAGAAAGGAGTCTATAGGAAAGGCAATCCACATCGTTCATCTTGAATTTAGGATCATCCATCCCGCTCCTGGACTTCCTGAGGATTTAATCCGGGAGATGTTTCATCAAGATCACGATGGCTCGAAAGAAGGTCTTGGTCTATATCTCAGCCAGAAGCTTGTGAAGATCATGAATGGCACTGTGCAGTATCTTAGAGAGGGAGAAACGTCATCGTTTATCATCGTCATTGAATTCCCATTGGTGCGATATTCCGCTTGA | 3360 | 42.41 | MSSPPSINKGPCSSSGPGPSKHGANVVSQTPIDAKLHVDFEGSEKFFDYTASIDFNIPGSTSNVHSSTVQSYLQNIQRGKLIQPFGCLIAVNKENLSVLAYSENAPEMLDLAPHAVPNIEQKEALTFGTDVRTLFRSPGAAALQKAADFEEVNLLNPLLVHCKTSGKPFYAILHRIDAGLIIDLEPVNPADVPVTSAGALKSYKLAAKAISKLQSLSSGNISRLCDVLVKEVSDLTGYDRVMVYKFHEDEHGEVIAECCRPDLESYLGLHYPATDIPQASRFLFMKNKVRIICDCLAPPVKVLQDKRLAQPLSLCGSALRAPHGCHSQYMVNMASIASLVMSITVNENDNEMENDEQKERKLWGLVVCHHTTPRFVPFPLRYACEFLIQVFGIQINKEVELQAQLKEKHILQIQTVLCDMLLRDAPVGIVTHSPNIMDLVKCDGAALYYKTKVWLLGVTPTEVQIRDITEWLLKDHSGSTGLSTDSLTEAGYFGASALGDDVCGMAAVRITSRDFLFWFRSHTAKEIRWGGAKHDPVGTDDGRKMHPRSSFKAFLEVVKQRSQPWEDVEMDAIHSLQLILRDSLQDVTEEESKMIATVPSVDERTQRLNELRATTNEMVRLFETATVPIFAVDVLGKINGWNSKATELTGLAVPQAIGMALVDVLVEDSVKVVKDMLSSAIQGIEEKNIEIKLKKYGTQEPNDPVILVVNSCCSRDPNGNVVGVCFVGQDVTEQKQIMNQYTQIQGDYAGIMRNPSALIPPIFMADDNGRCLEWNNAMEKLSGFKREEAINKMLLGEVFTLDDFGCHVKEQTLTKLSILLHRVFSGQDVDRLFFRFFDRQGNNVETLLSANKRTDAEGKITGVFFFLHVASSELQCALEMQQISEQATADSLYKLAYLRQEIRKPLAAITLMQNLMGSSDLSEYQKQLLKLSTSSREQLLKIVDETDIQSIEEGYMETNCGEFNLEDVLDVVINQMMILSQERQVMIVSESPADVSSWYLYGDNLRLQQVLSEFLTNTLLFTRKESSVVFKIIPRKESIGKAIHIVHLEFRIIHPAPGLPEDLIREMFHQDHDGSKEGLGLYLSQKLVKIMNGTVQYLREGETSSFIIVIEFPLVRYSA | 1119 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 2483094 | 2487379 | - | evm.model.ptg000013l.347 | HCH7g0347 | 547632 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH7g0347 | 1119 | CDD | PAS | 758 | 868 | IPR000014 | - | |
| HCH7g0347 | 1119 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 220 | 389 | IPR016132 | - | |
| HCH7g0347 | 1119 | SMART | gaf_1 | 220 | 409 | IPR003018 | GO:0005515(InterPro) | |
| HCH7g0347 | 1119 | ProSiteProfiles | PAC domain profile. | 687 | 743 | IPR000700 | - | |
| HCH7g0347 | 1119 | PRINTS | Phytochrome signature | 514 | 533 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH7g0347 | 1119 | PRINTS | Phytochrome signature | 320 | 341 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH7g0347 | 1119 | PRINTS | Phytochrome signature | 429 | 449 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH7g0347 | 1119 | PRINTS | Phytochrome signature | 709 | 726 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH7g0347 | 1119 | PRINTS | Phytochrome signature | 135 | 157 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH7g0347 | 1119 | PRINTS | Phytochrome signature | 235 | 254 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH7g0347 | 1119 | PRINTS | Phytochrome signature | 547 | 565 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH7g0347 | 1119 | PRINTS | Phytochrome signature | 636 | 651 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH7g0347 | 1119 | PRINTS | Phytochrome signature | 729 | 749 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH7g0347 | 1119 | PRINTS | Phytochrome signature | 617 | 633 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH7g0347 | 1119 | PANTHER | OS08G0260000 PROTEIN | 1 | 992 | - | - | |
| HCH7g0347 | 1119 | SMART | HKATPase_4 | 1002 | 1116 | IPR003594 | - | |
| HCH7g0347 | 1119 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 947 | 1113 | IPR036890 | - | |
| HCH7g0347 | 1119 | CDD | PAS | 625 | 731 | IPR000014 | - | |
| HCH7g0347 | 1119 | Pfam | Phytochrome region | 412 | 586 | IPR013515 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH7g0347 | 1119 | FunFam | Phytochrome | 955 | 1114 | - | - | |
| HCH7g0347 | 1119 | Gene3D | - | 404 | 577 | IPR043150 | - | |
| HCH7g0347 | 1119 | ProSiteProfiles | PAS repeat profile. | 614 | 684 | IPR000014 | - | |
| HCH7g0347 | 1119 | PIRSF | Phytochrome_conventional | 5 | 1119 | IPR012129 | GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro) | |
| HCH7g0347 | 1119 | Gene3D | - | 933 | 1108 | IPR036890 | - | |
| HCH7g0347 | 1119 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 761 | 865 | IPR035965 | - | |
| HCH7g0347 | 1119 | ProSiteProfiles | PAS repeat profile. | 747 | 803 | IPR000014 | - | |
| HCH7g0347 | 1119 | SUPERFAMILY | GAF domain-like | 200 | 396 | - | - | |
| HCH7g0347 | 1119 | FunFam | Phytochrome | 610 | 741 | - | - | |
| HCH7g0347 | 1119 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 76 | 189 | IPR035965 | - | |
| HCH7g0347 | 1119 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| HCH7g0347 | 1119 | CDD | HATPase_Phy-like | 1001 | 1112 | IPR044767 | - | |
| HCH7g0347 | 1119 | SUPERFAMILY | GAF domain-like | 407 | 589 | - | - | |
| HCH7g0347 | 1119 | Gene3D | PAS domain | 601 | 746 | - | - | |
| HCH7g0347 | 1119 | Pfam | PAS fold | 752 | 868 | IPR013767 | GO:0006355(InterPro) | |
| HCH7g0347 | 1119 | Pfam | PAS fold | 617 | 731 | IPR013767 | GO:0006355(InterPro) | |
| HCH7g0347 | 1119 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 320 | 329 | IPR013516 | - | |
| HCH7g0347 | 1119 | SMART | pas_2 | 616 | 682 | IPR000014 | - | |
| HCH7g0347 | 1119 | SMART | pas_2 | 746 | 815 | IPR000014 | - | |
| HCH7g0347 | 1119 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 1002 | 1111 | IPR003594 | - | |
| HCH7g0347 | 1119 | Gene3D | - | 201 | 560 | IPR029016 | - | |
| HCH7g0347 | 1119 | FunFam | Phytochrome | 404 | 537 | - | - | |
| HCH7g0347 | 1119 | Gene3D | PAS domain | 75 | 323 | - | - | |
| HCH7g0347 | 1119 | Gene3D | PAS domain | 760 | 873 | - | - | |
| HCH7g0347 | 1119 | Pfam | PAS fold | 72 | 187 | IPR013654 | GO:0006355(InterPro) | |
| HCH7g0347 | 1119 | ProSiteProfiles | Histidine kinase domain profile. | 897 | 1116 | IPR005467 | - | |
| HCH7g0347 | 1119 | Pfam | GAF domain | 221 | 398 | IPR003018 | GO:0005515(InterPro) | |
| HCH7g0347 | 1119 | CDD | HisKA | 895 | 945 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| HCH7g0347 | 1119 | NCBIfam | PAS domain S-box protein | 761 | 867 | IPR000014 | - | |
| HCH7g0347 | 1119 | NCBIfam | PAS domain S-box protein | 620 | 737 | IPR000014 | - | |
| HCH7g0347 | 1119 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 601 | 727 | IPR035965 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH7g0347 | HCH-Chr7:2483094 | HCH8g0009 | HCH-Chr8:963123 | 0.00E+00 | dispersed |
Pathway information