Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0347 ATGAGTTCGCCGCCGTCGATAAATAAGGGTCCATGTTCTTCGAGTGGCCCTGGTCCGTCGAAACATGGGGCCAATGTCGTTTCGCAGACCCCAATTGATGCGAAGCTTCATGTAGATTTTGAAGGCTCTGAAAAGTTCTTTGATTACACTGCATCAATTGATTTCAACATCCCGGGTTCAACTAGCAATGTTCATTCCTCCACTGTACAATCGTACCTTCAAAATATTCAGAGAGGAAAGCTGATTCAACCGTTTGGATGTTTGATTGCTGTCAATAAGGAAAACCTCTCGGTCCTTGCATACAGCGAAAATGCTCCAGAAATGTTGGACTTGGCTCCACATGCTGTTCCTAACATTGAGCAGAAAGAAGCCCTGACTTTTGGAACAGATGTTCGAACACTTTTTCGGTCCCCAGGTGCTGCTGCCTTACAGAAAGCAGCTGACTTTGAGGAAGTTAATCTTCTCAATCCTCTACTGGTTCATTGTAAAACTTCAGGGAAGCCATTTTATGCAATCTTGCATCGAATTGATGCAGGGTTAATCATTGATTTGGAACCAGTGAATCCAGCTGATGTGCCCGTGACTTCAGCTGGGGCATTGAAATCTTATAAGCTAGCAGCCAAAGCTATCTCAAAATTGCAGTCCTTGTCGAGTGGGAATATATCTCGTTTATGTGATGTATTGGTTAAGGAAGTTAGTGATTTGACAGGCTATGATCGGGTAATGGTGTACAAGTTTCACGAAGATGAGCATGGAGAAGTTATAGCTGAGTGCTGCCGACCTGACTTAGAATCATATCTTGGCTTGCACTACCCAGCTACTGATATACCTCAAGCTTCAAGATTCCTTTTTATGAAGAATAAAGTTAGGATTATATGTGATTGTTTAGCACCTCCTGTTAAAGTGCTGCAGGACAAGAGATTGGCTCAACCATTAAGTCTATGTGGATCTGCACTGAGGGCTCCTCATGGTTGTCATTCTCAGTATATGGTGAATATGGCTTCTATTGCATCTCTTGTGATGTCTATCACAGTCAACGAGAATGATAACGAAATGGAGAATGATGAACAAAAGGAAAGGAAGTTGTGGGGTTTAGTAGTTTGCCACCACACAACCCCCAGGTTTGTCCCATTTCCTTTGAGATATGCCTGTGAATTCTTGATTCAAGTATTTGGCATACAGATCAATAAGGAAGTGGAGTTGCAAGCCCAGTTGAAGGAAAAACACATATTGCAAATTCAAACAGTTCTTTGTGATATGCTACTAAGAGATGCACCGGTAGGAATTGTTACTCATTCTCCCAATATTATGGATCTTGTTAAGTGTGATGGTGCTGCCTTATATTACAAAACAAAGGTTTGGCTGCTTGGAGTCACCCCCACTGAGGTGCAAATTAGAGATATAACTGAATGGCTTCTCAAAGACCACAGTGGAAGCACAGGCTTAAGTACTGATAGCCTTACAGAAGCTGGTTACTTTGGTGCTTCTGCCCTTGGTGATGATGTTTGTGGAATGGCTGCTGTTAGGATTACCTCTAGGGACTTCCTTTTCTGGTTTCGGTCACATACGGCAAAAGAAATCAGGTGGGGTGGTGCAAAACACGATCCTGTTGGCACGGATGATGGAAGAAAGATGCATCCAAGATCATCATTCAAGGCTTTCCTGGAAGTGGTTAAGCAGCGTAGTCAGCCTTGGGAAGATGTGGAAATGGATGCCATCCACTCGTTGCAATTGATATTACGAGATTCTTTACAAGATGTCACAGAAGAGGAATCCAAAATGATTGCAACTGTCCCATCTGTTGATGAAAGGACACAAAGACTGAATGAATTGCGTGCCACTACAAATGAAATGGTTCGCCTATTTGAGACAGCTACAGTGCCTATCTTTGCTGTAGATGTCCTGGGCAAGATCAATGGTTGGAATTCCAAAGCAACCGAACTTACAGGATTGGCTGTCCCGCAAGCCATTGGCATGGCCTTGGTTGATGTTCTCGTGGAAGATTCAGTTAAGGTGGTAAAGGACATGCTTTCCTCCGCTATTCAAGGTATTGAAGAGAAAAATATTGAAATCAAGCTAAAAAAATATGGAACTCAAGAACCAAATGATCCGGTGATCTTAGTAGTTAACTCATGTTGTAGCCGAGACCCCAATGGTAATGTTGTAGGGGTTTGCTTTGTTGGCCAGGATGTTACTGAACAAAAGCAGATTATGAACCAATACACCCAAATCCAAGGTGACTACGCAGGAATTATGCGGAATCCATCTGCACTTATCCCTCCAATTTTTATGGCTGATGATAACGGCCGGTGCTTGGAATGGAACAATGCAATGGAAAAGTTATCTGGTTTCAAAAGGGAAGAGGCGATCAATAAGATGCTTCTTGGAGAGGTCTTTACGCTTGATGATTTTGGTTGCCATGTCAAAGAACAGACATTGACCAAGCTAAGTATACTACTGCATAGAGTATTTTCAGGCCAGGATGTTGACAGATTATTTTTTAGGTTCTTTGATCGTCAGGGAAATAATGTTGAAACATTGCTTTCTGCAAACAAAAGGACTGATGCAGAGGGAAAAATCACCGGGGTTTTCTTCTTCTTGCATGTGGCTAGTTCAGAACTTCAGTGTGCTTTGGAGATGCAGCAGATATCAGAACAAGCTACAGCCGATAGCCTCTATAAATTGGCATATCTACGTCAGGAAATTCGAAAACCTCTGGCTGCGATTACACTTATGCAGAATCTAATGGGGTCGTCTGACTTGAGTGAATATCAAAAGCAGCTACTTAAATTGAGCACTTCGAGTCGGGAACAATTGCTCAAGATTGTAGATGAAACTGACATTCAAAGTATTGAGGAAGGTTACATGGAAACAAACTGTGGTGAATTTAACCTTGAAGATGTTCTCGACGTTGTAATAAATCAAATGATGATTTTGAGCCAAGAGCGCCAGGTGATGATTGTCTCTGAATCACCTGCCGATGTGTCATCTTGGTACTTGTATGGAGATAACTTGAGGCTCCAACAGGTGCTCTCTGAGTTCTTGACTAATACACTTCTCTTCACTCGCAAAGAATCATCCGTTGTCTTCAAAATAATTCCAAGAAAGGAGTCTATAGGAAAGGCAATCCACATCGTTCATCTTGAATTTAGGATCATCCATCCCGCTCCTGGACTTCCTGAGGATTTAATCCGGGAGATGTTTCATCAAGATCACGATGGCTCGAAAGAAGGTCTTGGTCTATATCTCAGCCAGAAGCTTGTGAAGATCATGAATGGCACTGTGCAGTATCTTAGAGAGGGAGAAACGTCATCGTTTATCATCGTCATTGAATTCCCATTGGTGCGATATTCCGCTTGA 3360 42.41 MSSPPSINKGPCSSSGPGPSKHGANVVSQTPIDAKLHVDFEGSEKFFDYTASIDFNIPGSTSNVHSSTVQSYLQNIQRGKLIQPFGCLIAVNKENLSVLAYSENAPEMLDLAPHAVPNIEQKEALTFGTDVRTLFRSPGAAALQKAADFEEVNLLNPLLVHCKTSGKPFYAILHRIDAGLIIDLEPVNPADVPVTSAGALKSYKLAAKAISKLQSLSSGNISRLCDVLVKEVSDLTGYDRVMVYKFHEDEHGEVIAECCRPDLESYLGLHYPATDIPQASRFLFMKNKVRIICDCLAPPVKVLQDKRLAQPLSLCGSALRAPHGCHSQYMVNMASIASLVMSITVNENDNEMENDEQKERKLWGLVVCHHTTPRFVPFPLRYACEFLIQVFGIQINKEVELQAQLKEKHILQIQTVLCDMLLRDAPVGIVTHSPNIMDLVKCDGAALYYKTKVWLLGVTPTEVQIRDITEWLLKDHSGSTGLSTDSLTEAGYFGASALGDDVCGMAAVRITSRDFLFWFRSHTAKEIRWGGAKHDPVGTDDGRKMHPRSSFKAFLEVVKQRSQPWEDVEMDAIHSLQLILRDSLQDVTEEESKMIATVPSVDERTQRLNELRATTNEMVRLFETATVPIFAVDVLGKINGWNSKATELTGLAVPQAIGMALVDVLVEDSVKVVKDMLSSAIQGIEEKNIEIKLKKYGTQEPNDPVILVVNSCCSRDPNGNVVGVCFVGQDVTEQKQIMNQYTQIQGDYAGIMRNPSALIPPIFMADDNGRCLEWNNAMEKLSGFKREEAINKMLLGEVFTLDDFGCHVKEQTLTKLSILLHRVFSGQDVDRLFFRFFDRQGNNVETLLSANKRTDAEGKITGVFFFLHVASSELQCALEMQQISEQATADSLYKLAYLRQEIRKPLAAITLMQNLMGSSDLSEYQKQLLKLSTSSREQLLKIVDETDIQSIEEGYMETNCGEFNLEDVLDVVINQMMILSQERQVMIVSESPADVSSWYLYGDNLRLQQVLSEFLTNTLLFTRKESSVVFKIIPRKESIGKAIHIVHLEFRIIHPAPGLPEDLIREMFHQDHDGSKEGLGLYLSQKLVKIMNGTVQYLREGETSSFIIVIEFPLVRYSA 1119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2483094 2487379 - evm.model.ptg000013l.347 HCH7g0347 547632

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0347 1119 CDD PAS 758 868 IPR000014 -
HCH7g0347 1119 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 220 389 IPR016132 -
HCH7g0347 1119 SMART gaf_1 220 409 IPR003018 GO:0005515(InterPro)
HCH7g0347 1119 ProSiteProfiles PAC domain profile. 687 743 IPR000700 -
HCH7g0347 1119 PRINTS Phytochrome signature 514 533 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH7g0347 1119 PRINTS Phytochrome signature 320 341 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH7g0347 1119 PRINTS Phytochrome signature 429 449 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH7g0347 1119 PRINTS Phytochrome signature 709 726 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH7g0347 1119 PRINTS Phytochrome signature 135 157 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH7g0347 1119 PRINTS Phytochrome signature 235 254 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH7g0347 1119 PRINTS Phytochrome signature 547 565 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH7g0347 1119 PRINTS Phytochrome signature 636 651 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH7g0347 1119 PRINTS Phytochrome signature 729 749 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH7g0347 1119 PRINTS Phytochrome signature 617 633 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH7g0347 1119 PANTHER OS08G0260000 PROTEIN 1 992 - -
HCH7g0347 1119 SMART HKATPase_4 1002 1116 IPR003594 -
HCH7g0347 1119 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 947 1113 IPR036890 -
HCH7g0347 1119 CDD PAS 625 731 IPR000014 -
HCH7g0347 1119 Pfam Phytochrome region 412 586 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH7g0347 1119 FunFam Phytochrome 955 1114 - -
HCH7g0347 1119 Gene3D - 404 577 IPR043150 -
HCH7g0347 1119 ProSiteProfiles PAS repeat profile. 614 684 IPR000014 -
HCH7g0347 1119 PIRSF Phytochrome_conventional 5 1119 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
HCH7g0347 1119 Gene3D - 933 1108 IPR036890 -
HCH7g0347 1119 SUPERFAMILY PYP-like sensor domain (PAS domain) 761 865 IPR035965 -
HCH7g0347 1119 ProSiteProfiles PAS repeat profile. 747 803 IPR000014 -
HCH7g0347 1119 SUPERFAMILY GAF domain-like 200 396 - -
HCH7g0347 1119 FunFam Phytochrome 610 741 - -
HCH7g0347 1119 SUPERFAMILY PYP-like sensor domain (PAS domain) 76 189 IPR035965 -
HCH7g0347 1119 MobiDBLite consensus disorder prediction 1 26 - -
HCH7g0347 1119 CDD HATPase_Phy-like 1001 1112 IPR044767 -
HCH7g0347 1119 SUPERFAMILY GAF domain-like 407 589 - -
HCH7g0347 1119 Gene3D PAS domain 601 746 - -
HCH7g0347 1119 Pfam PAS fold 752 868 IPR013767 GO:0006355(InterPro)
HCH7g0347 1119 Pfam PAS fold 617 731 IPR013767 GO:0006355(InterPro)
HCH7g0347 1119 ProSitePatterns Phytochrome chromophore attachment site signature. 320 329 IPR013516 -
HCH7g0347 1119 SMART pas_2 616 682 IPR000014 -
HCH7g0347 1119 SMART pas_2 746 815 IPR000014 -
HCH7g0347 1119 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1002 1111 IPR003594 -
HCH7g0347 1119 Gene3D - 201 560 IPR029016 -
HCH7g0347 1119 FunFam Phytochrome 404 537 - -
HCH7g0347 1119 Gene3D PAS domain 75 323 - -
HCH7g0347 1119 Gene3D PAS domain 760 873 - -
HCH7g0347 1119 Pfam PAS fold 72 187 IPR013654 GO:0006355(InterPro)
HCH7g0347 1119 ProSiteProfiles Histidine kinase domain profile. 897 1116 IPR005467 -
HCH7g0347 1119 Pfam GAF domain 221 398 IPR003018 GO:0005515(InterPro)
HCH7g0347 1119 CDD HisKA 895 945 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH7g0347 1119 NCBIfam PAS domain S-box protein 761 867 IPR000014 -
HCH7g0347 1119 NCBIfam PAS domain S-box protein 620 737 IPR000014 -
HCH7g0347 1119 SUPERFAMILY PYP-like sensor domain (PAS domain) 601 727 IPR035965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0347 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0347 HCH-Chr7:2483094 HCH8g0009 HCH-Chr8:963123 0.00E+00 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH13g1345 . 3 1232 Histidine Kinase Gene Family AT2G17820 63.6 0.0e+00 1460.3
HCH1g0075 . 18 991 Histidine Kinase Gene Family AT2G01830 72.6 0.0e+00 1352.4
HCH10g1380 . 20 985 Histidine Kinase Gene Family AT2G01830 72.1 0.0e+00 1323.9
HCH7g0328 . 278 1230 Histidine Kinase Gene Family AT2G01830 53.6 9.0e-276 946.8
HCH10g0077 . 58 1008 Histidine Kinase Gene Family AT2G01830 53.2 1.3e-274 943.0
HCH2g0666 . 287 1240 Histidine Kinase Gene Family AT2G01830 52.7 4.1e-268 921.4
HCH12g0444 . 1 987 Histidine Kinase Gene Family AT5G10720 58.5 1.4e-296 1015.8
HCH8g0009 . 1 1122 Histidine Kinase Gene Family AT1G09570 78.6 0.0e+00 1788.9
HCH7g0347 . 13 1111 Histidine Kinase Gene Family AT1G09570 54.6 0.0e+00 1209.9
HCH7g1026 . 41 1127 Histidine Kinase Gene Family AT1G09570 54.2 0.0e+00 1189.1
HCH7g1026 . 37 1068 Histidine Kinase Gene Family AT2G18790 79.3 0.0e+00 1662.5
HCH3g0755 . 10 1023 Histidine Kinase Gene Family AT2G18790 58.8 0.0e+00 1216.8
HCH7g0347 . 27 1068 Histidine Kinase Gene Family AT2G18790 52.6 1.1e-311 1066.2
HCH8g0009 . 21 1056 Histidine Kinase Gene Family AT2G18790 51.5 1.6e-310 1062.4
HCH7g0347 . 20 1115 Histidine Kinase Gene Family AT5G35840 63.1 0.0e+00 1389.0
HCH7g1026 . 41 1129 Histidine Kinase Gene Family AT5G35840 52.9 0.0e+00 1149.0
HCH8g0009 . 9 1116 Histidine Kinase Gene Family AT5G35840 51.2 0.0e+00 1107.8
HCH7g1026 . 37 1129 Histidine Kinase Gene Family AT4G16250 76.6 0.0e+00 1700.3
HCH3g0755 . 10 1095 Histidine Kinase Gene Family AT4G16250 57.0 0.0e+00 1252.7
HCH8g0009 . 8 1117 Histidine Kinase Gene Family AT4G16250 51.5 0.0e+00 1120.5
HCH7g0347 . 19 1114 Histidine Kinase Gene Family AT4G16250 52.3 0.0e+00 1114.0
HCH3g0755 . 24 1109 Histidine Kinase Gene Family AT4G18130 61.6 0.0e+00 1335.1
HCH7g1026 . 45 1127 Histidine Kinase Gene Family AT4G18130 58.8 0.0e+00 1270.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005493 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 7 1 40