Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0359 ATGGGCCTCTCTAGTCTCCCAGCTCCATCCGAAGGAGTCCTCGGCGTGCTTCTCGTAAACACTGCACTATCGATTTCCATATTCAAATACATTGTTCAATTGATCCTCCATATAGTAGGATTTCGTCTCCCATCACCACCGTCAGATTCCTCTGAGAACTCCCGAGAATTGAGAGATTCCCATTTTGGTTCCTTTGGGAGTTACATTGAGGAGTTTCGGAACCGAAATCCCGCAATCCGTTTTGACAGAGTACATGGATGCAAACGTCAAGAACATGACTGCTCGGTCTGCTTGACTCGGTTCGAACCCGAATCAGAGATAAATCACTTGTCTTGTGGCCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGTCCTCTTTGTAGGACTCCTCTTATGCCAGCAGAAGAAATGTCTTGCTTTTGGTGA 450 46.22 MGLSSLPAPSEGVLGVLLVNTALSISIFKYIVQLILHIVGFRLPSPPSDSSENSRELRDSHFGSFGSYIEEFRNRNPAIRFDRVHGCKRQEHDCSVCLTRFEPESEINHLSCGHLFHTECLEKWLDYWNITCPLCRTPLMPAEEMSCFW 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2591459 2591908 - evm.model.ptg000013l.359 HCH7g0359 547644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0359 149 PANTHER - 1 148 IPR044249 -
HCH7g0359 149 SUPERFAMILY RING/U-box 89 141 - -
HCH7g0359 149 Pfam Ring finger domain 93 136 IPR001841 -
HCH7g0359 149 SMART ring_2 94 135 IPR001841 -
HCH7g0359 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 142 IPR013083 -
HCH7g0359 149 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0359 HCH-Chr7:2591459 HCH9g1181 HCH-Chr9:17842095 2.30E-07 dispersed
HCH2g0644 HCH-Chr2:50249077 HCH7g0359 HCH-Chr7:2591459 1.40E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0359 K16285 - csv:101216645 229.565