Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0361 ATGGGTTACATATGTGATTTCTGTGGGAATCAAAGGTCCGTTGTCCATTGCCGATCTGATGCAGCGTGTTTATGTTTATCTTGTGACCGTTCTGTTCATTCTGCCAATGCCTTGTCAAGGCGCCACTCAAGAACATTATTATGTAATAGGTGCCATTCGCAACCTGCATTTGTTAGATGTCCTGAAGAGAATATTTCTCTTTGTCAAAATTGTGATTATATGGGCCATAGCTCATCTGCCTCCATTTCATCACGTAAGAGGCAAACGATAAATTTTTATACAGGTTGCCCCACAGTTGCAGAGCTTTTATCTATCTGGCCATTTGTTCAAGATCTCCCATCTGTAAGTGATGCTTGTGAGCAAGAATTAGGATTGATGAGTATTGCCGAGAATAGTGCAGTAAATGCATGGGGGCCGGATGGAAATAATGCAGGTCCAAACGTATCTGGTCTTGATGAAACCAATGAATTTTTCAGTGTGGATAAATCAACAGATTGGTATGAGTCCTCTTTACTGCCTCAATTTATATCCAGGCCTCACATTATGGACCAACCGATCGGATCTGCAAATGCAACTTCACCCAAGTCACACCGTCCTGGAACAAAAGGTCCTGGACTTGGCATTGAAAATGACCTTCCTGAAGATTTCAATATAGATGAAGACTGTCTGAATCTCGAAAATTATGAAGAACTATTTGGTGTGTCTCTCACACATTCTGAAGAGTTATTTGAGAATGGTGGTATTGATAGCTTGTTCAGGATCAAAAGCATGTTTGCCGCTAATTCCAATTTCCTGGGTGCAGGTGCTGCAGAGGGGGCGTCAGCTGGATTTGATAATATCATGGGACCAGCAAACAGTAATGCAGCATCTGCAGATTCCATGATGAGTGCGAAGACTGAACCTATTATTTGTTTTAACAATAAGCAAGAGCACTCCAACGTGTCATTTTCTGGCCTTACTGGGGACAGCAGTGCTGGAGATCATCAAGACTGCGGAGCTTCATCAATGCGTCTAATGGGAGAGCCTCCATGGTGTTCTCCATGTCCAGAGAGTTCCTTCCAATCAACTAATCGTAGTGATGCTGTAATGCGCTATAAGGAAAAGAAGAAAACTCGCAAGTTTGAAAAAAAGGTGAGATACGCATCTCGTAAAGTGAGAGCCGATACAAGAAGGCGTGTCAAGGGCCGTTTTGTTAAAACTGGAGATGCTTATGATTATGACCCACTTAGTCCAGCCAGAAGCTACTAA 1248 42.63 MGYICDFCGNQRSVVHCRSDAACLCLSCDRSVHSANALSRRHSRTLLCNRCHSQPAFVRCPEENISLCQNCDYMGHSSSASISSRKRQTINFYTGCPTVAELLSIWPFVQDLPSVSDACEQELGLMSIAENSAVNAWGPDGNNAGPNVSGLDETNEFFSVDKSTDWYESSLLPQFISRPHIMDQPIGSANATSPKSHRPGTKGPGLGIENDLPEDFNIDEDCLNLENYEELFGVSLTHSEELFENGGIDSLFRIKSMFAANSNFLGAGAAEGASAGFDNIMGPANSNAASADSMMSAKTEPIICFNNKQEHSNVSFSGLTGDSSAGDHQDCGASSMRLMGEPPWCSPCPESSFQSTNRSDAVMRYKEKKKTRKFEKKVRYASRKVRADTRRRVKGRFVKTGDAYDYDPLSPARSY 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2602156 2608183 - evm.model.ptg000013l.361 HCH7g0361 547646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0361 415 Pfam CCT motif 358 400 IPR010402 GO:0005515(InterPro)
HCH7g0361 415 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
HCH7g0361 415 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 404 - -
HCH7g0361 415 MobiDBLite consensus disorder prediction 186 208 - -
HCH7g0361 415 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
HCH7g0361 415 CDD Bbox1_BBX-like 4 47 IPR049808 -
HCH7g0361 415 ProSiteProfiles CCT domain profile. 358 400 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0754 HCH-Chr2:51200939 HCH7g0361 HCH-Chr7:2602156 8.50E-44 dispersed
HCH7g0361 HCH-Chr7:2602156 HCH9g0345 HCH-Chr9:2144707 1.80E-09 dispersed
HCH5g1176 HCH-Chr5:40118108 HCH7g0361 HCH-Chr7:2602156 3.30E-15 transposed
HCH2g0643 HCH-Chr2:50240050 HCH7g0361 HCH-Chr7:2602156 2.80E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33848 PF06203 CCT 8.20E-17 CL0281 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0361 - - - 0.0