Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0369 ATGTTTAGAAAAAAGCAAACAAATTCTTCTTCATTCTTGTCCAAAATATTCCCATTAGAACCTTTTGCATGCAGGTCATTCTGTATACATGCTAAAGAGAGAGATATGAAAATGGATGAAGAAAGAGAAACCAAAGAGCTACCTAGCTCTACTTTCTCAACTTTTGTGGATCAAATTAGGCCTTCAGACAAGGTGACATCAATTGATGTCTTTCAACTGCCTGCAGAAAATGGTGATTCCAAAGGCAATAGTGATGATGCATTCACTTCCTTTTCTCCTGCTATCAGTAGAGAATTCTCCAAGAAGTGGATGACATTTGAAAGAGAAAACTCTTCTCCTGCAAAGACAGACATAAAGAGCTTAAGTTGTCGAAATTGGCCATCTTTCGGTGAACTCTCAGAAGCAAACATGACAGAGAAGGCTGCAAAAGACATAAAGAGCTTAAGTTGTCGAAATTGGCCATCTTTAAGTGAACTCTTAGAATCAAACATGACAGAGAAGACAGCAAAGGAAAACAAGAATGATGTTGTGTCTTCACTGCAACAGACATTTGTTGTCTCTGATGCAACAAAACCAGATTACCCTATCATGTTTGCCAGTGAAGGGTTCTTGGTTATGACCGGATATACGTCAGAGGAAGTTATCGGAAGGAACTGTCGGTTTCTTCAAGGGCTAGAGACGGATAAGCATGAAGTGGCCAAAATAAGAGATGCAATCAGAAAGGGGAATAGCTACTGTGGAAAGCTCTTGAACTACAAGAAGAATGGTACTCCTTTCTGGAATTTTTTCACTATTGGCCCTATCAAAGATCCACAAGGCAACATCATCAAATTTATTGGAATTCAGGTTGAGATCAGCAAATACACACAAGAAAAACCGAAGGCAATCGAGTTCATTACAGAGGTCCAAACTGTGAAAAGCCTAAGATCTTATCCGCATTCAAATAGGCATGATGCTGATATAAAACATGAAGAACAAGAAATAACCAACCCTGATTATGCTCTGCCTAAAGCTGTTGATGATAAGAATATTAGAACACGTGATGACCGAAAATATGAGTTAGATCTCAGAAATGATCTATCCTATTTGAAATCATATGAGGATTCCAGCATGGAATCAGGAATATCAGGTCTTGTTTCCTCAACGGGGTTCAAAAAAAAGCCTCTAGGATCAGTGGTTGAACATGAAGAGAAGACAGCTATGAAAACAACAAAGCATTATGAAATTGACTGTTCAGGCAGAAATCGTGATGCTAATCGAGAAAGAGACATACGTCAAGGAATCGATTTAGCAACCACATTGGAAAGGATAGAGGAAAATTTTGTGATTACTAACCCAAGACTTCCTGATAATCCTATTATATTTGCATCAGAAAAATTTCTTGACGTCACAGAATACAGGAGTGAAGAAGTTTTGGGAAGAAACTTTTGGTTTCTTCAAGGATCTGAAACAGATCAAGCAACTGTCTCAAAGATAAAAGATGCAATTGAAGAACAGAGAGAAGTATCTGTTCAGATAATCAACTACACAAAGAGTGGAAAGAAGTTCTGGAACTTATTCCACTTGCAACCAATGTGTGATAGGAAGGGCGAGCTTCAATACTTCATCAGCGTGCAATTCGATGTAAATCCTTCAAGCGAACGAACTTCAAAACGAACTGAACATCAAAGTGCTAAGCTGGTCAAAGCGATAGCACGGAAAGTCGATCAGGCTGTCCGCGAATTCCCTGATGCCAACTTGAAACCAGAAGATCTGTGGACAATCTATTGTCAGCCGGTCTTACCAAGGCCTCACAAGAAGTACAATTCTTCTTGGATAGCCCTACAAAATATTTCAAGCCATGGTGAAAAGATTGGCTTCCATCATTTTGAGCCAATAAAGCCACTGGGTTTTGGAGATATTGGCAGTGTTCATTTGGTAGAACTGAAAGGAACGGGAGAACTATTCGCTATGAAGGCAATAGAGAAGTCACTTATATTAAAGCGTAACAAGGTTCATCGAGTGTGCATGGAAAGGGAGATTATCGCACTCTTGGATCACCCTTTTCTTCCATCGCTGTACTCTTCATTTCAGACTCCTACACATGTTTGTTTGATAACGGACTATTGCGCCGGTGGAGACTTGTTTGCCTTACTTGACAGGCAGCCAATGAAGATGTTTAAAGAGGAAGCTGCTAGGTTCTATGCTGCAGAAATCGTCATCGCCTTGGAATACCTTCACTGTCTAGGAATTACTTATAGAGATCTAAAGCCTGAAAACATTCTACTCCAGAAGGATGGACATATTGTCCTTGCTGACTTTGATTTATCGGTTCGGGCATCTCAAGTGCAGCTTAAAATGAGAGGGAGATCTAGAAGAAAATCACCACCTGTGTTTGTTGCAGAACCAGTTGCACTACTGAATTCATTCATTGGAACTGAAGACTACATCGCTCCTGAAATTATTATGGGAGCAGGCCACAATTGCTCTGTTGACTGGTGGACTCTTGGTATATTGTTGTATGAAATGCTCTATGGACGCACTCCTTTCAAAGGCAAGAACAGGCAAAAAACATTTGCTAATGTTTTAGACAAAGACTTGACTTTCCCATTTAGTATTCCGGTAAGTCTTGCAGCAAGGCAGTTGATTGATGCACTGCTACAGAGAAAACCCAGTCGTCGTCTAGGATCAAGGACAGGTGCCGATGAAATCAAGCGACACCCTTTCTTTCAAGGAATAAAGTGGTCTAAACTCAGATCCATGATACCACCATTATCAGATGCAGCTCTTGTAATTGAAAAAGCTCCAAAAAGTAAAGATTTAAAGTGGGAAGATGGAGTTCCAAGTCATTCCAAAAACAGTGATATTTTCTGA 2853 39.89 MFRKKQTNSSSFLSKIFPLEPFACRSFCIHAKERDMKMDEERETKELPSSTFSTFVDQIRPSDKVTSIDVFQLPAENGDSKGNSDDAFTSFSPAISREFSKKWMTFERENSSPAKTDIKSLSCRNWPSFGELSEANMTEKAAKDIKSLSCRNWPSLSELLESNMTEKTAKENKNDVVSSLQQTFVVSDATKPDYPIMFASEGFLVMTGYTSEEVIGRNCRFLQGLETDKHEVAKIRDAIRKGNSYCGKLLNYKKNGTPFWNFFTIGPIKDPQGNIIKFIGIQVEISKYTQEKPKAIEFITEVQTVKSLRSYPHSNRHDADIKHEEQEITNPDYALPKAVDDKNIRTRDDRKYELDLRNDLSYLKSYEDSSMESGISGLVSSTGFKKKPLGSVVEHEEKTAMKTTKHYEIDCSGRNRDANRERDIRQGIDLATTLERIEENFVITNPRLPDNPIIFASEKFLDVTEYRSEEVLGRNFWFLQGSETDQATVSKIKDAIEEQREVSVQIINYTKSGKKFWNLFHLQPMCDRKGELQYFISVQFDVNPSSERTSKRTEHQSAKLVKAIARKVDQAVREFPDANLKPEDLWTIYCQPVLPRPHKKYNSSWIALQNISSHGEKIGFHHFEPIKPLGFGDIGSVHLVELKGTGELFAMKAIEKSLILKRNKVHRVCMEREIIALLDHPFLPSLYSSFQTPTHVCLITDYCAGGDLFALLDRQPMKMFKEEAARFYAAEIVIALEYLHCLGITYRDLKPENILLQKDGHIVLADFDLSVRASQVQLKMRGRSRRKSPPVFVAEPVALLNSFIGTEDYIAPEIIMGAGHNCSVDWWTLGILLYEMLYGRTPFKGKNRQKTFANVLDKDLTFPFSIPVSLAARQLIDALLQRKPSRRLGSRTGADEIKRHPFFQGIKWSKLRSMIPPLSDAALVIEKAPKSKDLKWEDGVPSHSKNSDIF 950
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2662668 2671258 + evm.model.ptg000013l.369 HCH7g0369 547654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0369 950 SMART pac_2 503 545 IPR001610 -
HCH7g0369 950 SMART pac_2 246 288 IPR001610 -
HCH7g0369 950 Gene3D PAS domain 415 575 - -
HCH7g0369 950 CDD STKc_phototropin_like 621 917 - -
HCH7g0369 950 ProSitePatterns Serine/Threonine protein kinases active-site signature. 744 756 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g0369 950 PANTHER FLIPPASE KINASE 1-RELATED 559 921 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
HCH7g0369 950 ProSiteProfiles PAC domain profile. 243 297 IPR000700 -
HCH7g0369 950 Pfam Protein kinase domain 624 903 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0369 950 ProSiteProfiles PAC domain profile. 500 554 IPR000700 -
HCH7g0369 950 SUPERFAMILY PYP-like sensor domain (PAS domain) 442 542 IPR035965 -
HCH7g0369 950 Gene3D Transferase(Phosphotransferase) domain 1 707 917 - -
HCH7g0369 950 Gene3D Phosphorylase Kinase; domain 1 622 706 - -
HCH7g0369 950 SMART pas_2 428 497 IPR000014 -
HCH7g0369 950 SMART pas_2 171 244 IPR000014 -
HCH7g0369 950 ProSiteProfiles Protein kinase domain profile. 623 903 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0369 950 Gene3D PAS domain 183 331 - -
HCH7g0369 950 CDD PAS 196 285 IPR000014 -
HCH7g0369 950 SUPERFAMILY PYP-like sensor domain (PAS domain) 190 283 IPR035965 -
HCH7g0369 950 FunFam Protein kinase C 706 921 - -
HCH7g0369 950 NCBIfam PAS domain S-box protein 452 544 IPR000014 -
HCH7g0369 950 NCBIfam PAS domain S-box protein 196 290 IPR000014 -
HCH7g0369 950 CDD PAS 449 542 IPR000014 -
HCH7g0369 950 Pfam PAS domain 449 542 IPR000014 -
HCH7g0369 950 Pfam PAS domain 190 286 IPR000014 -
HCH7g0369 950 SMART serkin_6 623 903 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0369 950 SUPERFAMILY Protein kinase-like (PK-like) 600 918 IPR011009 -
HCH7g0369 950 ProSiteProfiles PAS repeat profile. 169 218 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1136 HCH-Chr2:54029545 HCH7g0369 HCH-Chr7:2662668 1.20E-237 dispersed
HCH3g1038 HCH-Chr3:14475731 HCH7g0369 HCH-Chr7:2662668 4.10E-87 dispersed
HCH5g1047 HCH-Chr5:12511927 HCH7g0369 HCH-Chr7:2662668 4.40E-59 dispersed
HCH7g0369 HCH-Chr7:2662668 HCH9g0115 HCH-Chr9:603573 1.40E-89 dispersed
HCH11g0014 HCH-Chr11:661138 HCH7g0369 HCH-Chr7:2662668 1.80E-53 transposed
HCH1g0716 HCH-Chr1:55997970 HCH7g0369 HCH-Chr7:2662668 5.10E-48 transposed
HCH8g1345 HCH-Chr8:48336948 HCH7g0369 HCH-Chr7:2662668 9.10E-58 transposed
HCH14g0744 HCH-Chr14:35712754 HCH7g0369 HCH-Chr7:2662668 5.30E-87 wgd
HCH2g0628 HCH-Chr2:50079413 HCH7g0369 HCH-Chr7:2662668 4.40E-290 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81628 PF00069 Pkinase 1.10E-61 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0369 K20715 - csv:101213364 1139.79