Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0380 ATGGGTGTTCTTGAAGCTACTATATTCTACTTCATTCTTTTGCAGGTACCCAATGCCAATATCTATGCAGCCAAGGATGAAGAATGGAAAACTGCTACTGCTACCTACTCCAAAGAAACTGATGGGTCTATCATTACAGGTGCCGTTTTCCCTTTCTTTCTTATTAAAACTACTCGGGGTCGTTTGGTTCGAGGTTTGTATGAGAATAAGATATCCATGTTTGATTTTACACGAGCATTCATGGTATCAAGAAAATCCATAGATTTTGAACTCTTTCAAGAACTCCTTTTTTTTTTAGCTGTATCTGGGATTTTAGAACCAAAAAGAAGGGTTCACGAGCTACCTTTTTTTTTTTTTACTGATTTTGCAGAAGGTGCTTGTGGTTTTGGAGATCTGCATAAGATTAGCTATGGAAATTACAGTGCAGGATTAAGTAGCATGTTGTTCAATAGAGGGAGTACCTGTGGAGCTTGCTATGAGCTTAGGTGTGTTGATCACATCTTATGGTGCTTGCAAGGAAGCCCAACCGTTATCCTAACCGCTACCGATTTCTGTCCTCCCAATTATGGCTTATCGTCGGATTATGGTGGCTGGTGCAATTTTCCACAAGAACACTTTGAGATGTCTGAGGCAGCATTTGCTGAAATAGCAGAGAAGAAAGCTGATATCGTGCCGGTTCAATTTAGGAGGGTGAGGTGTGACAGAAGTGGTGGATTGAGGTTCACAGTCGGTGGGAATTCTCGATTCTTTCAAGTTCTGATCACCAATGTTGGAATGGATGGTGAATTAGTAGCTGTGAAAGTGAAGGGATCGAGGACGGGATGGATACCGCTGGCAAGGAACTGGGGACAGAACTGGCAAAGCAATGTCAATCTCCAAGGGCAACCTCTCTCTTTTGAAGTTACCTCTAGCAGTGGAAGAGCACTCACTTCCTATGGTGTAGCACCAGGAAACTGGCAGTTTGGGCAGACATTTGAAGGGAAACAATTTTGA 993 42.5 MGVLEATIFYFILLQVPNANIYAAKDEEWKTATATYSKETDGSIITGAVFPFFLIKTTRGRLVRGLYENKISMFDFTRAFMVSRKSIDFELFQELLFFLAVSGILEPKRRVHELPFFFFTDFAEGACGFGDLHKISYGNYSAGLSSMLFNRGSTCGACYELRCVDHILWCLQGSPTVILTATDFCPPNYGLSSDYGGWCNFPQEHFEMSEAAFAEIAEKKADIVPVQFRRVRCDRSGGLRFTVGGNSRFFQVLITNVGMDGELVAVKVKGSRTGWIPLARNWGQNWQSNVNLQGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2758765 2759852 - evm.model.ptg000013l.380 HCH7g0380 547665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0380 330 SMART dpbb_1 141 228 IPR007112 -
HCH7g0380 330 CDD DPBB_EXPA_N 124 233 - -
HCH7g0380 330 Pfam Lytic transglycolase 142 228 IPR009009 -
HCH7g0380 330 PANTHER EXPANSIN-A15 27 330 IPR002963 GO:0009664(InterPro)
HCH7g0380 330 PRINTS Expansin signature 196 213 IPR002963 GO:0009664(InterPro)
HCH7g0380 330 PRINTS Expansin signature 237 249 IPR002963 GO:0009664(InterPro)
HCH7g0380 330 PRINTS Expansin signature 136 150 IPR002963 GO:0009664(InterPro)
HCH7g0380 330 PRINTS Expansin signature 313 329 IPR002963 GO:0009664(InterPro)
HCH7g0380 330 PRINTS Expansin signature 213 226 IPR002963 GO:0009664(InterPro)
HCH7g0380 330 PRINTS Expansin signature 249 270 IPR002963 GO:0009664(InterPro)
HCH7g0380 330 PRINTS Expansin signature 284 305 IPR002963 GO:0009664(InterPro)
HCH7g0380 330 PRINTS Expansin signature 163 174 IPR002963 GO:0009664(InterPro)
HCH7g0380 330 PRINTS Expansin signature 177 187 IPR002963 GO:0009664(InterPro)
HCH7g0380 330 SUPERFAMILY PHL pollen allergen 235 327 IPR036749 -
HCH7g0380 330 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 124 238 IPR007112 -
HCH7g0380 330 Gene3D - 15 234 IPR036908 -
HCH7g0380 330 Gene3D - 238 330 IPR036749 -
HCH7g0380 330 Pfam Expansin C-terminal domain 240 316 IPR007117 -
HCH7g0380 330 SUPERFAMILY Barwin-like endoglucanases 118 256 IPR036908 -
HCH7g0380 330 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 248 327 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0380 HCH-Chr7:2758765 HCH9g0677 HCH-Chr9:4503623 1.00E-68 dispersed
HCH7g0380 HCH-Chr7:2758765 HCH13g0492 HCH-Chr13:3426508 1.20E-69 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0380 - - - 0.0