Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0393 ATGAATCTAGCTTGGCTCCTTTCATTTTTCCTTCTTTATATTGAAGCAATTTCAGAAGGGGCCTTGAGACCTGATGTAGTGAAAGTTGGATCTATACTTGCACTGAATTCTGTCAATGGGAAAGTATCTAAGATTGCCATAGAGGCTGCTGAGAAGGATGTGAATTCTGATCCAAGTGTTCTTGGTGGGAGAAAGCTGTCGATATCCGTGTTTGATGCAAATTACAGTGGATTTCTTGGTATTATAGGAGCAATGAAGTACATGGTGTCTGACACAATAGCTGTAATCGGTCCGCAGGATGCAGTAATGGCACATATACTCTCACATCTTTCAAATGAACTCCATGTCCCATTTCTGTCATTTACAGCATTGGACCCAACCCTTTCACCTCTACAGTTTCCGTACTTCATTCAAACAGCTCCAAATGATCAATTCCAGATGACTGCAATTGCAGATATGATTAGTTATTATGGTTGGCATGACGTAGTTGTTGTTTTTACCGATGATGATCAGAGCAGAAATGGTATGATTACCTTGAGTGATAAACTTGCAGAGAGAAGTTTAAAAGTTTCTTACAAAGCGGCACTTCCCCCTTACCCAACAGCAACCGAAATTCAAATTCACAATGAATTGGTAAAGATTAAAATGATGGAGTCTCGAGTAATTGTATTGAACACGTTTTCGATGACAGGTTTCTTGGTTTTTGAAGTAGCTCAAAGCCTTGGAATGATGGAAAGTGGGTATGTTTGGATAGCTTCTAGTTGGCTGACAACAGTTTTAGATTCTACTTCACCACTTCCCTTGAAAATTGCCAACTCTATCCAAGGAGTTCTTACTCTTCGCCTGCACACACCGGATTCAAAAAGAAAACGGTCTTTCATATCTAATTGGAACAAACTGAGTAATGGTTCCATTGGATTGAATATTTTTGGCTTATATGCATATGATACTGTTTGGTTAATTGCAAGAGCAGTGAAAGAGTTATTTGATCAAAATGTCACCATTTCATTCTCCAAAAATACTCTTGTTAGTTCACTGGGCATTTTTAATGAAGGGCAGCAGCTGCTTCACAACCTATTGAAGACCAACATGACTGGTCTGACTGGGCCCGTTCAGTTTTCTTCAGATAGATCCCCTTTAAATCCTTCATATGATATTATAAATATAAGGAAATCTGGTGCAAAGAAAATTGGATACTGGTCCAATTATTCGAGGTTATCTGTCGTGCTGCCCGAAACATTGTATGGAAGACCAGCCAACCATTCTAGTTCAGCCCAACAGTTAAACAGCACCGTGTGGCCTGGGGGATCGACAATACAGCCTCGTGGTTGGGTTATTCCATTAAATGGAAGGCAGTTAAGAATTGGTGTTCCATACAGAGTTAGTTATCAGGACTTTGTGTCACCAGGAAATGGAAATGGCACAGTCCAAGGATACTGCATTGATGTATTCATTGCTGCCGTTAAATTGCTTCCATATGCATTTACTTATAAGTTCATTTTGTTTGGGAATGGCCAAAATAATCCTAGCTACTTTGAACTCGTAAATATGGTCGCATCTAAAAATTTTGATGCTGCTGTTGGTGACATTGCAATTGTGACTAGCCGAACAAAGATTGTCGATTTCACTCAGCCTTATGTTGACTCAGGGCTAGTAGTGGTGACTCCAGTCAGGAAATTGAGCTCAAGTCCTTTGGCTTTCTTTCGCCCGTTTACCCCAATGATGTGGGCTGTTACAGCAGCTTTTTTCCTATTCATTGGAGCAGTAGTGTGGATTTTGGAACATCGAAGAAATGATGAGTTCCGAGGAACTCCTAGGAAACAAATTGTTACAATTCTCTGGTTTGGCCTCTCCACTATGTTCTTTGCACACAGAGAAAATGTCATGAGCTCGCTTGGTCGTTTTGTGATAATCGTGTGGCTTTTCGTGGTTTTAATAATCAACTCAAGCTACACTGCTAGTCTGACATCCATATTCACAGTTCAGCAGCTCTCCTCATCTATCACAGGAATTGATACATTGGTAACTAGCAATGAACCTATTGGATTCCAAGTTGGTTCTTTTGCTGAAAGTTATTTAAGTGAGCAACTTAATATTAGAAAGTCTAGGCTTGTTGCTCTTGGATCCCCAGAAGAATATGCTGCCGCGCTCGAGAAAGGAAGGGTTGTGGCTATTGTTGATGAAAAGCCATACGTAGATCTCTTTCTCAATGAGTACTGCAAATTTTCAATTAGAGGCCAACAGTTCACAAAAAGTGGGTGGGGATTTGCATTTCCACGGGACTCTCCGTTGGCCATCGACTTGTCCACTGCCATACTCGCTCTATCTGAGAATGGTGATCTTCAAAAGATTCATGACAAGTGGTTTTCCAGAAAGTCATGTGATTCCACAGATTCTGATACTGGATTAGAACAACTTCACCTACAAAACTTCATTGGACTGTTCTTCATTTGTGCTGTGATATGTATTTTTGCTCTAATATTACACTTTTGCTCAACATTATGCCAGTTCCGCCGCCATTTGAAACAAGACCCCGAAGCTTCAATCGGTAACAATTCTAGCTCTCCGCCTTTGCGACAATTCTTATCGTTTATCGATGAAAGGAAAGACAGACTAAGTAGCAAGTCGAAAAGAAAACGAGAAGTTTCATTCTCAAATGGACGCGGGGAAGAGTAG 2676 40.47 MNLAWLLSFFLLYIEAISEGALRPDVVKVGSILALNSVNGKVSKIAIEAAEKDVNSDPSVLGGRKLSISVFDANYSGFLGIIGAMKYMVSDTIAVIGPQDAVMAHILSHLSNELHVPFLSFTALDPTLSPLQFPYFIQTAPNDQFQMTAIADMISYYGWHDVVVVFTDDDQSRNGMITLSDKLAERSLKVSYKAALPPYPTATEIQIHNELVKIKMMESRVIVLNTFSMTGFLVFEVAQSLGMMESGYVWIASSWLTTVLDSTSPLPLKIANSIQGVLTLRLHTPDSKRKRSFISNWNKLSNGSIGLNIFGLYAYDTVWLIARAVKELFDQNVTISFSKNTLVSSLGIFNEGQQLLHNLLKTNMTGLTGPVQFSSDRSPLNPSYDIINIRKSGAKKIGYWSNYSRLSVVLPETLYGRPANHSSSAQQLNSTVWPGGSTIQPRGWVIPLNGRQLRIGVPYRVSYQDFVSPGNGNGTVQGYCIDVFIAAVKLLPYAFTYKFILFGNGQNNPSYFELVNMVASKNFDAAVGDIAIVTSRTKIVDFTQPYVDSGLVVVTPVRKLSSSPLAFFRPFTPMMWAVTAAFFLFIGAVVWILEHRRNDEFRGTPRKQIVTILWFGLSTMFFAHRENVMSSLGRFVIIVWLFVVLIINSSYTASLTSIFTVQQLSSSITGIDTLVTSNEPIGFQVGSFAESYLSEQLNIRKSRLVALGSPEEYAAALEKGRVVAIVDEKPYVDLFLNEYCKFSIRGQQFTKSGWGFAFPRDSPLAIDLSTAILALSENGDLQKIHDKWFSRKSCDSTDSDTGLEQLHLQNFIGLFFICAVICIFALILHFCSTLCQFRRHLKQDPEASIGNNSSSPPLRQFLSFIDERKDRLSSKSKRKREVSFSNGRGEE 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2827069 2830890 - evm.model.ptg000013l.393 HCH7g0393 547678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0393 891 FunFam Glutamate receptor 448 564 - -
HCH7g0393 891 Gene3D - 45 381 - -
HCH7g0393 891 SUPERFAMILY Periplasmic binding protein-like II 431 791 - -
HCH7g0393 891 Gene3D - 719 796 - -
HCH7g0393 891 Gene3D - 142 405 - -
HCH7g0393 891 FunFam Glutamate receptor 142 307 - -
HCH7g0393 891 CDD GluR_Plant 451 789 - -
HCH7g0393 891 SUPERFAMILY Periplasmic binding protein-like I 22 445 IPR028082 -
HCH7g0393 891 Pfam Ligand-gated ion channel 791 820 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
HCH7g0393 891 MobiDBLite consensus disorder prediction 870 891 - -
HCH7g0393 891 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 27 863 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
HCH7g0393 891 SMART GluR_14 454 791 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
HCH7g0393 891 Pfam Bacterial extracellular solute-binding proteins, family 3 462 574 IPR001638 -
HCH7g0393 891 Pfam Receptor family ligand binding region 44 390 IPR001828 -
HCH7g0393 891 Gene3D - 563 701 - -
HCH7g0393 891 PIRSF IGluLR_plant 1 891 IPR017103 -
HCH7g0393 891 Gene3D - 446 562 - -
HCH7g0393 891 FunFam Glutamate receptor 564 694 - -
HCH7g0393 891 FunFam Glutamate receptor 690 793 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0741 HCH-Chr2:51074149 HCH7g0393 HCH-Chr7:2827069 2.10E-225 dispersed
HCH2g0742 HCH-Chr2:51087788 HCH7g0393 HCH-Chr7:2827069 1.30E-262 dispersed
HCH7g0232 HCH-Chr7:1548066 HCH7g0393 HCH-Chr7:2827069 9.60E-234 dispersed
HCH7g0393 HCH-Chr7:2827069 HCH8g0995 HCH-Chr8:46037465 1.50E-114 dispersed
HCH12g0047 HCH-Chr12:243662 HCH7g0393 HCH-Chr7:2827069 1.30E-281 wgd
HCH14g0718 HCH-Chr14:35570764 HCH7g0393 HCH-Chr7:2827069 3.70E-281 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0393 K05387 - csv:101208602 1298.49