Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0424 ATGGCTTCATTTCTTCTCTCTCTCTTCTTCTTCCTCTTTCTCATCATCATTTCTTCTACTACTGCTTGCGATCGTTGTATTCATCAATCCAAAGCCGCTTATTACCAGGACGATTCAGCCGGTTTGTATAGAGGAGCTTGTGGATATGGAAACTTGACATTGGAACTCTCCAATGGCCACTTTGCAGCTTCTGTGCCTTCTCTCTACGAAAAAGGAGCTGGTTGTGGTGCCTGTTTTCAAATAAGATGCAAAAATGAGAAACTTTGCAGCAGAATAGGGAGTAAGATAGTTTTGACAGATAGAAATAATAATCCCAAAACAGATTTTGTCCTTAGTCAGAGAGCTTATTCTGCAATGGCTTTGAAAGGCAAGGAGCAACAACTTTTGAAAGATGGGATCGTGGACGTGGAATACAAAAGGATTCCATGTGAATACAAAGACAAAAACTTATCAGTGAGAGTGGAAGAATCAAGTCAAAATCCATACTACTTAGCCATCAAATTCCTCTACCAAGGCGGCCAAACAGAAATAGTTGCTGTCGACGTAGCTTCTGTTGGGTACTCAAATTGGAGCTTCATGAGCAGAAATTATGGAGCCGTCTGGGACACTAATAGAGTACCAAAAGGAGCATTGCAGCTAAGGACAGTGGTGACTTCCGGTTACGACGGAAAGTGGATTTGGGCGAAGTCGGTGCTTCCCGCCGATTGGAAACCCGGAGTAATTTACGATGCCGAGGTTCAGATCGACGACATTGCGAAAGAAGGTTGTCCACCACCGCAATGCGGCGATGGACCGTGGAAATGA 804 43.91 MASFLLSLFFFLFLIIISSTTACDRCIHQSKAAYYQDDSAGLYRGACGYGNLTLELSNGHFAASVPSLYEKGAGCGACFQIRCKNEKLCSRIGSKIVLTDRNNNPKTDFVLSQRAYSAMALKGKEQQLLKDGIVDVEYKRIPCEYKDKNLSVRVEESSQNPYYLAIKFLYQGGQTEIVAVDVASVGYSNWSFMSRNYGAVWDTNRVPKGALQLRTVVTSGYDGKWIWAKSVLPADWKPGVIYDAEVQIDDIAKEGCPPPQCGDGPWK 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3074550 3076198 - evm.model.ptg000013l.424 HCH7g0424 547709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0424 267 SUPERFAMILY PHL pollen allergen 148 243 IPR036749 -
HCH7g0424 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 244 IPR007117 -
HCH7g0424 267 Gene3D - 145 248 IPR036749 -
HCH7g0424 267 Pfam Lytic transglycolase 64 138 IPR009009 -
HCH7g0424 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 148 IPR007112 -
HCH7g0424 267 Gene3D - 16 144 IPR036908 -
HCH7g0424 267 Pfam Expansin C-terminal domain 152 233 IPR007117 -
HCH7g0424 267 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576(InterPro)
HCH7g0424 267 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
HCH7g0424 267 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576(InterPro)
HCH7g0424 267 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
HCH7g0424 267 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576(InterPro)
HCH7g0424 267 SUPERFAMILY Barwin-like endoglucanases 13 146 IPR036908 -
HCH7g0424 267 CDD DPBB_EXLA_N 21 145 - -
HCH7g0424 267 SMART dpbb_1 62 138 IPR007112 -
HCH7g0424 267 PRINTS Major pollen allergen Lol pI signature 120 135 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH7g0424 267 PRINTS Major pollen allergen Lol pI signature 220 237 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH7g0424 267 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH7g0424 267 PRINTS Major pollen allergen Lol pI signature 153 168 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH7g0424 267 PANTHER EXPANSIN-B3 9 250 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0327 HCH-Chr5:2149917 HCH7g0424 HCH-Chr7:3074550 3.30E-43 dispersed
HCH7g0424 HCH-Chr7:3074550 HCH7g0426 HCH-Chr7:3094470 7.50E-86 dispersed
HCH7g0424 HCH-Chr7:3074550 HCH7g0425 HCH-Chr7:3085911 3.10E-100 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0424 - - - 0.0