Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0425 ATGGGTTTGTTTCTTAGCTTTTTGTTCTTGTTTTTGGTCTCTTCTGTGACTGCTTGTGATCGTTGTATCCATCAATCCAAGGCTACTCATTACTATGGCGATTCTCCTACTTCATATGGTGGGGCATGTGGGTATGGAAACTTGGCTTTGGAAATCTCTAAAGGTTACTTTGCAGCTGCCACACCTTCCCTTTATAAACAAGGAGCTGGTTGTGGTGCTTGTTATCAGATAAAATGTAAAAACAAAAGACTCTGCAGCACGAGAGGGACTAGAGTAGTTTTAACAGATCAAAATTCTGATAACCGAACAGATTTTATTCTTAGTAGAAAAGCATTCTCTGCAATGGCTGTGAATGGCAATGATCAAGAACTTTTAAATTCCGGAATTATCGACATCGAATACAAGAGGATACCTTGTGAATACAAAAACAAAAACTTGTTAGTGAAAGTTGAAGAATGGAGCCATAAACCATACTACTTGGCAATTAAATTCCTATACCAAGGTGGCCAAACTGATATTCAAGCAGTTAATATAGCTCAGGTTGGGATTCCAAAATGGGGTCCAATGAAGAGAAACTATGGAGCTATATGGGATACCAATAAAGTACCTGAAGGGGCATTGCAGCTAAGAATGGTGGTAACTTCTGGATATGATAATGGGAAGTGGAATTGGGCAAGTTATGTTCTTCCTGATGATTGGAAAAATGGAGAGATTTATGATTCTGGAATTCAAATTAAGGATATTGCCACTGAGTTTTGCCCTTCATGGCAATGTGATGATCATGGCCAATGGAAGTGA 798 38.72 MGLFLSFLFLFLVSSVTACDRCIHQSKATHYYGDSPTSYGGACGYGNLALEISKGYFAAATPSLYKQGAGCGACYQIKCKNKRLCSTRGTRVVLTDQNSDNRTDFILSRKAFSAMAVNGNDQELLNSGIIDIEYKRIPCEYKNKNLLVKVEEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGIPKWGPMKRNYGAIWDTNKVPEGALQLRMVVTSGYDNGKWNWASYVLPDDWKNGEIYDSGIQIKDIATEFCPSWQCDDHGQWK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3085911 3091290 - evm.model.ptg000013l.425 HCH7g0425 547710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0425 265 Pfam Expansin C-terminal domain 153 229 IPR007117 -
HCH7g0425 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 241 IPR007117 -
HCH7g0425 265 Gene3D - 141 246 IPR036749 -
HCH7g0425 265 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
HCH7g0425 265 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
HCH7g0425 265 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
HCH7g0425 265 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
HCH7g0425 265 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
HCH7g0425 265 CDD DPBB_EXLA_N 17 141 - -
HCH7g0425 265 SMART dpbb_1 58 134 IPR007112 -
HCH7g0425 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
HCH7g0425 265 Pfam Lytic transglycolase 59 134 IPR009009 -
HCH7g0425 265 SUPERFAMILY Barwin-like endoglucanases 9 143 IPR036908 -
HCH7g0425 265 PANTHER EXPANSIN-B3 8 247 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
HCH7g0425 265 Gene3D - 13 140 IPR036908 -
HCH7g0425 265 SUPERFAMILY PHL pollen allergen 144 241 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0425 HCH-Chr7:3085911 HCH7g1773 HCH-Chr7:49316647 1.50E-30 dispersed
HCH7g0424 HCH-Chr7:3074550 HCH7g0425 HCH-Chr7:3085911 3.10E-100 tandem
HCH7g0425 HCH-Chr7:3085911 HCH7g0426 HCH-Chr7:3094470 1.40E-92 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0425 - - - 0.0