Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0426 ATGGCTTGGCCTCTTTGTTTTCTCTTTTTATTTTTAGTCTCTTCTGCTGCTACTGCTTGTGATCGATGCATCCATCATTCCAAAGCTGCTTATTATCATCAAGATTCACCAACATCGAATGGGTGGGGGGCATGTAGATATGGCTTCTTGGCTGTAGAATTCTCCAATGGTTACTTTGCAGCTGCTGTGCCTTCCATTTACAAACTAGGAACTGGTTGTGGTGCTTGTTATCAGGTAAGGTGCAAAAACAGAAGATTGTGCACAACAACAGGGACTAAAGTGGTGTTAACAGATCAAAATTATGATAATAGAACAGATTTTGTTCTTAGTAAGAAAGCTTTCTCTGAAATGGGCCGAAAGGGCATCGCCCAACATCTTTTGAAACTTGGGACTACTGATGTAGAATATAAGAGGGTTCCATGTGAATACAAGAAGAAAAATATGTCAATATGGATACAAGAATGGAGCCAGAAACCCTATTACTTTGCTATCAAATTCTTGTACCAAGGTGGCCAGACAGAGATTGTAGCAGTCAAGATAGCTCAGGTGGGTTCCTCAGACAGGGGCTATGTGTATTTGGAAAGGAAATATGGGGCCATTTGGGAGACAAGAAAAGTGCCAGAAGGAGCAATGCAAGTATGGATGAAGGTGAAAACTTCAGGACTGAAAGAGAAGTGGATTAGGGCAAAGAATGAGATTCCTGCTGATTGGATAAGAGGAGTGATTTATGATATTGGAATTCAAATCAAGGAGATTGTCAAAGAGGTTTGCCCTCCATCTCAATGTGGTGATGGACAAATATGGAAGTGA 810 40.86 MAWPLCFLFLFLVSSAATACDRCIHHSKAAYYHQDSPTSNGWGACRYGFLAVEFSNGYFAAAVPSIYKLGTGCGACYQVRCKNRRLCTTTGTKVVLTDQNYDNRTDFVLSKKAFSEMGRKGIAQHLLKLGTTDVEYKRVPCEYKKKNMSIWIQEWSQKPYYFAIKFLYQGGQTEIVAVKIAQVGSSDRGYVYLERKYGAIWETRKVPEGAMQVWMKVKTSGLKEKWIRAKNEIPADWIRGVIYDIGIQIKEIVKEVCPPSQCGDGQIWK 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3094470 3096941 - evm.model.ptg000013l.426 HCH7g0426 547711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0426 269 Pfam Expansin C-terminal domain 157 234 IPR007117 -
HCH7g0426 269 SUPERFAMILY PHL pollen allergen 146 244 IPR036749 -
HCH7g0426 269 SUPERFAMILY Barwin-like endoglucanases 8 144 IPR036908 -
HCH7g0426 269 Gene3D - 142 245 IPR036749 -
HCH7g0426 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 146 IPR007112 -
HCH7g0426 269 Pfam Lytic transglycolase 61 136 IPR009009 -
HCH7g0426 269 CDD DPBB_EXLA_N 15 143 - -
HCH7g0426 269 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576(InterPro)
HCH7g0426 269 PRINTS Expansin/Lol pI family signature 129 145 IPR007118 GO:0005576(InterPro)
HCH7g0426 269 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576(InterPro)
HCH7g0426 269 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576(InterPro)
HCH7g0426 269 Gene3D - 12 141 IPR036908 -
HCH7g0426 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 245 IPR007117 -
HCH7g0426 269 PANTHER EXPANSIN-B3 6 250 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0424 HCH-Chr7:3074550 HCH7g0426 HCH-Chr7:3094470 7.50E-86 dispersed
HCH7g0425 HCH-Chr7:3085911 HCH7g0426 HCH-Chr7:3094470 1.40E-92 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0426 - - - 0.0