Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0439 ATGGTTATGGAAGATAACGAGAGCTGTGGAAGTAGAGCTTACGACTCGTTAACGCCGTTACAGAGCCGTCAACAACGGCAGAAGTTTGAGGTTTATAATGAGATTCTTCGTCGCCTTAAAGATTCTAATCATCACGAAGCTATTCAGCCTGGTTTTGATGATCAACTTTGGAATCACTTTAATCGCCTTCCTACTCGATATGCTCTTGACGTGAATGTAGAGCGGGCAGAAGATGTTCTAATGCATAAAAGGTTATTGCAATTCGCTCACGATCCTGCGAATCGACCTGCGATTGAAGTTCGCCTTGTGCAGGTTCATGCTACTTCTGATGGAAATTCAGCTGAGTTTTCTGATTCATATCCTATAAAAGACATTAACCAGAGTTCCCCAAATTTTACTAGCAAACAGAGCATGCACCCACCACCTGCCTTTGGGTCATCTCCTAATCTCGAAGCCCTAGCACTTGAAGCTAATAAAGCTCAGGATCAGGAGGAGGATGATTCTGTACATAATAATACACAATATTGCCGGCCAATGCATGAAATAACTTTCTCCACGGATGATAAGCCAAAACTTCTTAGTCAGTTGACTGCCATGCTTGCGGAAATTGGGTTGAACATACAAGAGGCACATGCATTTTCCACAATAGATGGTTACTCCTTGGATGTTTTTGTTGTTGATGGTTGGCCATATGAGGAAACGGAACAGTTGAAGACTGCATTAGAGAAAAGTGTCTTACAGGTTGAGAGGCAGGCTTGGCCAAATCATAAATCCTTATCTCCTGTAGGGGAACACGATGTAACAATTAAATATGAACCCGATCGTGTGGAAATTCCCTCAGATGGGACTGATGTATGGGAAATTGATCCTAGACATCTGAAGTTCGAGCATAAAGTTGCATCTGGGTCATATGGGGATTTGTACAAAGGTACATACTGCAGTCAGGAAGTGGCTATTAAAATCCTCAAACCCGAGCGTGTAAATTCAGATATGCAAAGTGAGTTTGCTCAGGAGGTGTATATTATGAGGAAAGTCAGGCACAAAAATGTTGTACAATTTATTGGTGCATGTACTAAGCCCCCCAGCTTGTGCATTGTAACAGAATTTATGTCTGGTGGTAGCGTCTATGACTATCTACATAAACAAAGGGGCACTTTTAGGCTTCCAACTTTGCTCAAGGTAGCCATTGATGTTTCCAAGGGAATGAATTACTTGCACCAAAATAATATAATTCACCGAGATTTGAAAGCTGCCAATCTTCTGATGGATGAAAATGAAGTTGTAAAGGTTGGTGATTTTGGGGTTGCCAGAGTGAAGGCTCAATCAGGAGTTATGACAGCAGAAACTGGGACATATCGGTGGATGGCTCCTGAGGTTATAGAACACAAACCCTATGATCACAAGGCTGATGTCTTCAGTTTTGCAATTGTTTTGTGGGAGTTGCTTACTGGAAAGCTTCCCTATGAATTCCTAACCCCATTACAAGCAGCAGTTGGAGTGGTTCAAAAGAATTTACGGCCTACCATTCCAAAGCATACTCATCCCAAGCTGGCTGAGTTGCTGGAGAGATGTTGGCAGCAAGATCCTTCATCTAGGCCTGACTTCTCTGAAATTATTGAGATATTACAGCGGATAGCAAAGGAGGTCGCTGAAGATGGAGAGGATCGTCGAAAGGAGAAGTCCGGAGGATTCCTGTCTGTCTTGAGACGAAATCATCATTGA 1722 42.62 MVMEDNESCGSRAYDSLTPLQSRQQRQKFEVYNEILRRLKDSNHHEAIQPGFDDQLWNHFNRLPTRYALDVNVERAEDVLMHKRLLQFAHDPANRPAIEVRLVQVHATSDGNSAEFSDSYPIKDINQSSPNFTSKQSMHPPPAFGSSPNLEALALEANKAQDQEEDDSVHNNTQYCRPMHEITFSTDDKPKLLSQLTAMLAEIGLNIQEAHAFSTIDGYSLDVFVVDGWPYEETEQLKTALEKSVLQVERQAWPNHKSLSPVGEHDVTIKYEPDRVEIPSDGTDVWEIDPRHLKFEHKVASGSYGDLYKGTYCSQEVAIKILKPERVNSDMQSEFAQEVYIMRKVRHKNVVQFIGACTKPPSLCIVTEFMSGGSVYDYLHKQRGTFRLPTLLKVAIDVSKGMNYLHQNNIIHRDLKAANLLMDENEVVKVGDFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFAIVLWELLTGKLPYEFLTPLQAAVGVVQKNLRPTIPKHTHPKLAELLERCWQQDPSSRPDFSEIIEILQRIAKEVAEDGEDRRKEKSGGFLSVLRRNHH 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3248409 3256275 + evm.model.ptg000013l.439 HCH7g0439 547724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0439 573 SUPERFAMILY ACT-like 177 243 IPR045865 -
HCH7g0439 573 SMART serkin_6 293 547 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0439 573 Gene3D Phosphorylase Kinase; domain 1 282 371 - -
HCH7g0439 573 FunFam serine/threonine-protein kinase HT1 372 562 - -
HCH7g0439 573 ProSiteProfiles Protein kinase domain profile. 293 545 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0439 573 MobiDBLite consensus disorder prediction 112 143 - -
HCH7g0439 573 MobiDBLite consensus disorder prediction 112 148 - -
HCH7g0439 573 ProSiteProfiles ACT domain profile. 181 253 IPR002912 -
HCH7g0439 573 FunFam Serine/threonine-protein kinase isoform 1 283 371 - -
HCH7g0439 573 PRINTS Tyrosine kinase catalytic domain signature 367 380 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g0439 573 PRINTS Tyrosine kinase catalytic domain signature 404 422 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g0439 573 PRINTS Tyrosine kinase catalytic domain signature 450 460 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g0439 573 PRINTS Tyrosine kinase catalytic domain signature 513 535 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g0439 573 PRINTS Tyrosine kinase catalytic domain signature 469 491 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g0439 573 PANTHER SERINE-THREONINE PROTEIN KINASE 118 546 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
HCH7g0439 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g0439 573 Coils Coil 231 251 - -
HCH7g0439 573 Gene3D - 179 251 - -
HCH7g0439 573 Pfam Protein tyrosine and serine/threonine kinase 293 542 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g0439 573 SUPERFAMILY Protein kinase-like (PK-like) 277 542 IPR011009 -
HCH7g0439 573 CDD ACT_TyrKc 179 246 - -
HCH7g0439 573 Gene3D Transferase(Phosphotransferase) domain 1 372 566 - -
HCH7g0439 573 CDD STKc_MAP3K-like 299 542 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1320 HCH-Chr13:41142912 HCH7g0439 HCH-Chr7:3248409 8.30E-231 dispersed
HCH5g0568 HCH-Chr5:3920126 HCH7g0439 HCH-Chr7:3248409 6.30E-23 dispersed
HCH6g0400 HCH-Chr6:7819020 HCH7g0439 HCH-Chr7:3248409 4.30E-31 dispersed
HCH6g1239 HCH-Chr6:46774570 HCH7g0439 HCH-Chr7:3248409 2.00E-38 dispersed
HCH7g0439 HCH-Chr7:3248409 HCH8g1383 HCH-Chr8:48541098 1.90E-70 dispersed
HCH7g1684 HCH-Chr7:48770534 HCH7g0439 HCH-Chr7:3248409 8.80E-22 dispersed
HCH12g0473 HCH-Chr12:2780971 HCH7g0439 HCH-Chr7:3248409 1.10E-46 transposed
HCH13g0225 HCH-Chr13:1470369 HCH7g0439 HCH-Chr7:3248409 3.90E-145 transposed
HCH7g0856 HCH-Chr7:24397780 HCH7g0439 HCH-Chr7:3248409 7.40E-73 transposed
HCH12g0092 HCH-Chr12:490808 HCH7g0439 HCH-Chr7:3248409 2.20E-201 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81632 PF07714 PK_Tyr_Ser-Thr 5.00E-74 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0439 - - - 0.0