Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0440 ATGGATACGCTTAAGAAATCTTTCAAAGGCAACGTATCTTTCAAGCATGCAAGAAAAATTTCTGCTAGTGGTGGAGGAGGCGATAACAACCACGAAGAACTTCCCATTCTTTTTGATCATGAACCTCAGGATCCCTCGGACGGCATCACCGAGGTCATTCTGAAGATCGACGATGGCGGTTCTTCCACCGCCGGTAATGGCGGGAAGATATGGCGGGAGACAACAAGCTATGAAGATCCTCCAACGAAGCTGATTGAACAGTTTCTCCATAAGCAAAAAATAAGAGGTGAAACGGCTTTGGATATGGATTTAGAAATGGAGGAGCTTCGTCTGCAGACTTCTAAGGATCTCAAGGTCTCGTTCAAGCATGATCTGACCGATGTTTCGAACAACGAATCGGTCCGAAGACGATATAGAGATTCCTATGACTTGCAAGAACGACAACAACAACAACATGGTGTTTCTGAGGTTGTAAGATGCACGTCCAACATTTCATTTCAAAGAGAGCTTTCCTTCCAAAGGAAGTCTAATTTGATTAGAGCAAAAACCAAGTCACGGTTAATGGATCCACCTGAAGAACCTGATTGTTTATTGTCTGGTCGGATACCTAAATCCGGACAGCTTCGGTCAGGCTTTCTAGGGAAAGTCGACGACGACGACGATGATCCCTTCATGGAAGATGACCTACCAGACGATTTCAAAAAAGGAAACCTCAATGCATTAACTTTGCTACAATGGGTCAGTTTGGTTTTAATCACAGGTGCTTTAGTTTGCACTATTTATGTTCCATATCTAAGAGAAAAGAGCTTATGGGAGCTTGATATGTGGAAATGGGAGGTGATGATTTTGGTGTTGATTTGTGGAAGATTGGTATCTGGTTGGGGCATTAGGATTATTGTTTTTCTCATTGAGATGAATTTTCTTTTGAGGAAAAGAGTTTTGTATTTTGTTTATGGGGTTAGAAAGCCAGTGCAGAATTGTTTATGGCTAGGCCTTGTTTTGATTGCTTGGCATCTATTGTTTGATAAGAGGGTTAAGAGGGAAACTAATAGCAATATGCTTAAGTATGTGACAAGAATTTTAGCATGTTTTTTGATAAGCACTTTGGTTTGGTTAGTGAAAGCCTTGATGGTGAAAGTGCTGGCTTCTTCCTTCCATGTGAGCACATACTTTGACAGAATTCAGGAATCTTTATTTAATCAGTACGTGATTGAGACGCTCTCAGGGCCTCCATTGATGGAGATTCAGAAGAATGAGGAAGAGGAAGAGGAAGAGAAGCTTGCTGATGAAGTTCAAAAATTACAAAATGCAGGTATTAATATACCCCCTGATCTCAAGGCTACAGCCTTTACTTCTTTGAAAAGTGGGAGAGTAATAGGCAGTGGAGGGACACAGAAGAGTTTTCGAGGGAAGAGTTGTAAGTTTTCGAGGTCGCTTACGAAGAAGGGAAACGAGGGGATCACGATTGATCATTTGCATAAACTTAGTCCTAAGAATGTATCAGCTTGGAATATGAAGAGGTTGTTGAAGATAGTTAGACATGGTAGTATTTCCACATTGGATGAGCAGATAGAGGGTCCATGTCTTGGGGATGAATCTTCTACACAGATCAAAAGTGAACGTGAGGCACAAGCTGCAGCAAAGAAAATTTTCCACAATGTGGCTCGGCGTGGATTTAAGTACATTTACCTGGAGGACTTGATGCGCTTCATGAGAGAAGATGAGGCTTTGAGAACCATGTGTCTCTTCGAAGGAGCGTCTGAAAGACAAAGGATAAGCAAATCTTCCTTGAAAAATTGGGTGGTTAATGCTTTCAGAGAAAGAAGAGCCCTTGCTTTGACTCTAAATGATACCAAAACAGCTGTTGATAAACTGCACCATATGGTGAATATTATAGTTGGTATCATTATATTGATCATATGGCTTATAATACTGGAAATTGCCTCCACCAAATTTTTCCTATTCCTCAGTTCCCAAATTGTGGTTGTGGCATTTGTTTTTGGAAACACTTGCAAGACCATATTTGAAGCAATCATCTTTGTGTTTGTGATGCATCCGTTTGACGTTGGAGACCGATGTGAAATCGACGGGATTCAGATGATTGTAGAAGAAATGAATATCTTGACTACTGTATTCTTGAGATATGACAACATGAAGATTATATTCCCAAATAACGTTCTCGCAACAAAATCAATTCATAACTACTACCGAAGTCCCGACATGGGCGATGCTGTCGAGTTCTGCGTCCACATATCGACGCCCGTTGAGAAAATCGCTGTCATGAAACAAAGAATCGTAAGTTATATTGAGAGCCACAAAGAACATTGGTACCCTTCTCCTATGATTGTTTTTAAGGATGTGGAAGACTTAAATAAGCTGAGATTAGCTATTTGGTTGACACATAGAATAAATCACCAAGACATGGGTGAAAGATGGACCAGGAGGGCTATTCTGGTTGAAGAAGTGGTGAAGATTTGTCAAGAACTTGACATTCAATACCGTTTGTTGCCCCTTGATATCAATGTTCGTTCCCTGCCTTCTGTGGGCTCTAATGCTAATTGGACTCCATCGGTAAACTGA 2580 40.89 MDTLKKSFKGNVSFKHARKISASGGGGDNNHEELPILFDHEPQDPSDGITEVILKIDDGGSSTAGNGGKIWRETTSYEDPPTKLIEQFLHKQKIRGETALDMDLEMEELRLQTSKDLKVSFKHDLTDVSNNESVRRRYRDSYDLQERQQQQHGVSEVVRCTSNISFQRELSFQRKSNLIRAKTKSRLMDPPEEPDCLLSGRIPKSGQLRSGFLGKVDDDDDDPFMEDDLPDDFKKGNLNALTLLQWVSLVLITGALVCTIYVPYLREKSLWELDMWKWEVMILVLICGRLVSGWGIRIIVFLIEMNFLLRKRVLYFVYGVRKPVQNCLWLGLVLIAWHLLFDKRVKRETNSNMLKYVTRILACFLISTLVWLVKALMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLMEIQKNEEEEEEEKLADEVQKLQNAGINIPPDLKATAFTSLKSGRVIGSGGTQKSFRGKSCKFSRSLTKKGNEGITIDHLHKLSPKNVSAWNMKRLLKIVRHGSISTLDEQIEGPCLGDESSTQIKSEREAQAAAKKIFHNVARRGFKYIYLEDLMRFMREDEALRTMCLFEGASERQRISKSSLKNWVVNAFRERRALALTLNDTKTAVDKLHHMVNIIVGIIILIIWLIILEIASTKFFLFLSSQIVVVAFVFGNTCKTIFEAIIFVFVMHPFDVGDRCEIDGIQMIVEEMNILTTVFLRYDNMKIIFPNNVLATKSIHNYYRSPDMGDAVEFCVHISTPVEKIAVMKQRIVSYIESHKEHWYPSPMIVFKDVEDLNKLRLAIWLTHRINHQDMGERWTRRAILVEEVVKICQELDIQYRLLPLDINVRSLPSVGSNANWTPSVN 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3258243 3261907 + evm.model.ptg000013l.440 HCH7g0440 547725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0440 859 Gene3D - 686 735 IPR023408 -
HCH7g0440 859 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 28 852 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
HCH7g0440 859 Pfam Mechanosensitive ion channel, beta-domain 679 736 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH7g0440 859 FunFam Predicted mechanosensitive ion channel 686 735 - -
HCH7g0440 859 Coils Coil 413 437 - -
HCH7g0440 859 SUPERFAMILY Sm-like ribonucleoproteins 676 735 IPR010920 -
HCH7g0440 859 PIRSF Memb_At2g17000 13 857 IPR016688 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1377 HCH-Chr6:47698743 HCH7g0440 HCH-Chr7:3258243 7.70E-135 dispersed
HCH7g0440 HCH-Chr7:3258243 HCH8g0615 HCH-Chr8:42947174 3.50E-153 dispersed
HCH2g0582 HCH-Chr2:49639800 HCH7g0440 HCH-Chr7:3258243 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0440 K22048 - csv:101207426 1277.69