Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0452 ATGTTATCAGAGGTGATGAATTTTCTGAGGACCTGTTTCCGGCCGAGGTCCGATCGATACACCGGAACCGATTTCCAGGGGCGGCAGGAGGGGTTGTTGTGGTATAAAGACAGTGGGCAGCATTTGAATGGGGAATTCTCAATGTCTGTGGTTCAGGCCAATAATTTACTTGAAGATCAGAGCCAAATTGAGTCTGGCAGTTTGAGCTTGCTTGAGTCTGGTCCTAATGGTACATTTGTTGGCGTCTATGATGGCCATGGAGGCCCTGAGACTTCTCGGTATATTTGTGATCACCTCTTTCAGCATCTTAAGAGATTTACTTCTGAAGAACACTCAATGTCTGGCGATGTAATACGCAGGGCATTCCAAGCGACTGAAGAGGGTTTTCTTTCTTTAGTCAGAAGAAAATGGCCAACAAATCCACAAATTGCAGCTGTTGGATCATGCTGTCTTGTGGGTGTAATCTGTAATGCGACTCTTTATGTTGCAAATGCAGGCGATTCACGTGCTGTTTTGGGTAGAGTAGTGAAAGCAACAGGCGAGGTTCTAGCCATTCAATTGTCAACAGAGCACAATGCTTCCAATGAGTCTGTGAGGCAAGAGCTGCATTCCTTGCATCCGGATGATTCACAGATTGTTGTTCTAAAGCATAATGTATGGCGAGTAAAGGGCATCATACAGGTTTCCCGTTCTATAGGTGACGTCTACTTAAAAAATGCTGAGTTCAACAAAGAACCTTTGTATATAAAGTTTCGTGTTCGAGAACCTTTCAGAAGGCCGATTTTGAGCTCTGAACCCTCCATTTCTGAGATCCAGTTGAAGCCACACGATCGGTTTATCATATTTGCATCAGATGGGTTGTGGGAGCACCTTACCAATCAGGAAGCAGTTGATATAGTTCATAACCATCCCCAAAGTGGGAGTGCAAAAAGACTGGTCAAAGCTGCTCTGCAAGTAGCAGCAAAAAAGAGAGAAATGAGGTACTCAGACTTGAAGAAGATAGCCCGTGGTGTTCGTCGTCATTTCCATGACGACATCACCGTGATTGTTGTGTTTCTTGATACAAATCTGCTCTTCAGCGCCGGTGCTGTGAAGAAGCCAAGTGTCTCACTACGAGGGGGTGGAGTCAACCGGCTTCCTAACTCATTAGCCCCTGTCATTACACTCGCAGAAGCTGGCGATACCTGA 1188 45.54 MLSEVMNFLRTCFRPRSDRYTGTDFQGRQEGLLWYKDSGQHLNGEFSMSVVQANNLLEDQSQIESGSLSLLESGPNGTFVGVYDGHGGPETSRYICDHLFQHLKRFTSEEHSMSGDVIRRAFQATEEGFLSLVRRKWPTNPQIAAVGSCCLVGVICNATLYVANAGDSRAVLGRVVKATGEVLAIQLSTEHNASNESVRQELHSLHPDDSQIVVLKHNVWRVKGIIQVSRSIGDVYLKNAEFNKEPLYIKFRVREPFRRPILSSEPSISEIQLKPHDRFIIFASDGLWEHLTNQEAVDIVHNHPQSGSAKRLVKAALQVAAKKREMRYSDLKKIARGVRRHFHDDITVIVVFLDTNLLFSAGAVKKPSVSLRGGGVNRLPNSLAPVITLAEAGDT 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3352611 3356610 - evm.model.ptg000013l.452 HCH7g0452 547737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0452 395 CDD PP2Cc 46 353 IPR001932 -
HCH7g0452 395 Pfam Protein phosphatase 2C 72 320 IPR001932 -
HCH7g0452 395 FunFam Phosphatase 2C family protein 34 363 - -
HCH7g0452 395 SUPERFAMILY PP2C-like 50 354 IPR036457 -
HCH7g0452 395 SMART PP2C_4 37 351 IPR001932 -
HCH7g0452 395 Gene3D - 31 358 IPR036457 -
HCH7g0452 395 ProSiteProfiles PPM-type phosphatase domain profile. 45 353 IPR001932 -
HCH7g0452 395 PANTHER PROTEIN PHOSPHATASE 37 352 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH7g0452 395 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0682 HCH-Chr14:35329750 HCH7g0452 HCH-Chr7:3352611 2.60E-167 dispersed
HCH2g0571 HCH-Chr2:49532998 HCH7g0452 HCH-Chr7:3352611 1.40E-176 dispersed
HCH6g1755 HCH-Chr6:50026499 HCH7g0452 HCH-Chr7:3352611 2.10E-113 dispersed
HCH7g0452 HCH-Chr7:3352611 HCH7g0720 HCH-Chr7:8945553 5.50E-109 dispersed
HCH7g0447 HCH-Chr7:3329129 HCH7g0452 HCH-Chr7:3352611 4.80E-37 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0452 - - - 0.0