Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0462 ATGTCGAAAGAAGTAACTGAAGAAGCTCAGGCCGGCCACAGCAAGGACTACGTGGACCCACCACCTGCTCCACTCATTGACGCTGGCGAACTCAAGCTCTGGTCTTTCTACAGAGCCCTCATCGCAGAATTCATCGCCACCCTCCTCTTCCTCTACATCACCGTCGCCACCGTCATCGGAAACAATAAACAAACCAAAATCTGCGACGGCGTCGGTATTCTCGGTATCGCTTGGGCCTTCGGTGGCATGATCTTTATTCTCGTTTACTGCACCGCCGGTATCTCTGGTGGTCATATTAACCCGGCGGTGACTTTTGGGCTGTTTTTGGCTCGAAAAGTTTCTCTAATTAGAGCTGTGGGTTATATTCTTGCTCAATGTGCTGGAGCTATTGTTGGCGTTGGGTTAGTTAAAGCTTTCATGAAGCATGACTATAACGCAAACGGCGGCGGTGCTAATGTCGTAGCTCATGGTTACAACAAGGGTACTGCTCTTGGAGCTGAGATTATTGGTACCTTTGTTCTTGTTTACACCGTCTTCTCCGCCACCGATCCCAAGAGGAGTGCTCGTGACTCCCATATCCCGGTTTTGGCTCCACTGCCCATTGGCTTCGCCGTCTTCATGGTTCACTTAGCCACCATTCCCATCACCGGAACTGGAATCAATCCAGCCAGAAGCTTTGGCGCTGCTGTCATTTACAACCAAGAGAAGCCGTGGAACGAGCACTGGATTTTCTGGGTCGGGCCGTTCGTCGGAGCACTAGCGGCGGCGGCATACCACCAGTACATTCTCCGGGCAGCAGCCATTAAAGCATTGGGATCATTCCGAAGCAATCCGACCAATTAA 843 51.36 MSKEVTEEAQAGHSKDYVDPPPAPLIDAGELKLWSFYRALIAEFIATLLFLYITVATVIGNNKQTKICDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVGYILAQCAGAIVGVGLVKAFMKHDYNANGGGANVVAHGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNQEKPWNEHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3447180 3448627 - evm.model.ptg000013l.462 HCH7g0462 547747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0462 280 FunFam Probable aquaporin PIP1-2 23 278 - -
HCH7g0462 280 SUPERFAMILY Aquaporin-like 30 264 IPR023271 -
HCH7g0462 280 ProSitePatterns MIP family signature. 98 106 IPR022357 -
HCH7g0462 280 Gene3D Glycerol uptake facilitator protein. 23 280 IPR023271 -
HCH7g0462 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 276 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
HCH7g0462 280 NCBIfam MIP family channel protein 42 258 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH7g0462 280 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH7g0462 280 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH7g0462 280 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH7g0462 280 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH7g0462 280 PRINTS Major intrinsic protein family signature 242 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH7g0462 280 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH7g0462 280 CDD MIP 38 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH7g0462 280 Pfam Major intrinsic protein 30 259 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0462 HCH-Chr7:3447180 HCH9g0590 HCH-Chr9:3974820 1.10E-116 dispersed
HCH7g0462 HCH-Chr7:3447180 HCH1g0670 HCH-Chr1:55597239 5.20E-122 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0462 K09872 - csv:101209627 523.857