Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0470 ATGGACGACGGTGAGATTGATTTTTCAAATCAAGAAGTGTTTTCGAGCCCGAATGTGGAGCTTCCTAGCAGTTGCTCAATGGATAGTTTCTTTGATGAACTTCTCAAGGACACGCATACTTGTACTCATACTCATACTTGCAATCCGCCGGGTCCTGACTATTCGCATACACATACCTGTTTTCATGTCCACACTAAAATTCTCTCTGCCTCGACTGAAGACAATATTGTTACGGATGACACTGCGGAATCTACGGAGAAGAAGTCGAAGAAACGGCCATTGGGAAACCGAGAAGCTGTTCGTAAGTATCGGGAGAAGAAGAAGGCCAGGGCAGCCTCGTTGGAGGATGAAGTTGCTAAATTGAGGGCTTTGAATCAGCATTTGATGAAGAAGTTGCAGGGTCAAGCAGCGCTGGAGGCTGAGGTTGCGAGACTCAAGTGTTTGCTTGTGGATATCCGGGGTAGAATTGAAGGGGAGATTGGATCTTTCCCTTACCAGAAACCCGTGAATCATAACCTGTCCAATCCAAACTTCCCCGGTGCTTACGTGATGAATCCATGTAATATGCAGTGTGAGGATCAGGTTTATTGCCTTCATCCGGGGGTTGATGGCAGCGGAAATGGAGAAGGTGCTGTGATAAATGGACAGGTTTTGGGTGCTTGTGAATTTGAAAGTCTTCAGTGTCTGGCAAATCAAGACTCGGGATCAAAAGAGCTACCTGGGTGTGGAGTAGTAGGGAATGTGGCTTTGAATGATATTTCTTCAGGAGCGGCAAAAAGGAAAGGAGTTAGCCGCAAAGAGACATGGAATTGA 813 46.25 MDDGEIDFSNQEVFSSPNVELPSSCSMDSFFDELLKDTHTCTHTHTCNPPGPDYSHTHTCFHVHTKILSASTEDNIVTDDTAESTEKKSKKRPLGNREAVRKYREKKKARAASLEDEVAKLRALNQHLMKKLQGQAALEAEVARLKCLLVDIRGRIEGEIGSFPYQKPVNHNLSNPNFPGAYVMNPCNMQCEDQVYCLHPGVDGSGNGEGAVINGQVLGACEFESLQCLANQDSGSKELPGCGVVGNVALNDISSGAAKRKGVSRKETWN 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3530153 3531568 - evm.model.ptg000013l.470 HCH7g0470 547755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0470 270 SUPERFAMILY Leucine zipper domain 88 134 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g0470 270 Coils Coil 97 131 - -
HCH7g0470 270 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 86 133 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g0470 270 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 177 IPR031106 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER)
HCH7g0470 270 SMART brlzneu 84 151 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g0470 270 CDD bZIP 90 143 - -
HCH7g0470 270 Gene3D - 77 152 - -
HCH7g0470 270 Pfam Basic region leucine zipper 85 141 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0534 HCH-Chr1:54315124 HCH7g0470 HCH-Chr7:3530153 3.40E-22 dispersed
HCH2g0558 HCH-Chr2:49429474 HCH7g0470 HCH-Chr7:3530153 7.80E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33855 PF07716 bZIP_2 5.10E-14 CL0018 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0470 K25785 - csv:101208161 465.692