Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH7g0470 | ATGGACGACGGTGAGATTGATTTTTCAAATCAAGAAGTGTTTTCGAGCCCGAATGTGGAGCTTCCTAGCAGTTGCTCAATGGATAGTTTCTTTGATGAACTTCTCAAGGACACGCATACTTGTACTCATACTCATACTTGCAATCCGCCGGGTCCTGACTATTCGCATACACATACCTGTTTTCATGTCCACACTAAAATTCTCTCTGCCTCGACTGAAGACAATATTGTTACGGATGACACTGCGGAATCTACGGAGAAGAAGTCGAAGAAACGGCCATTGGGAAACCGAGAAGCTGTTCGTAAGTATCGGGAGAAGAAGAAGGCCAGGGCAGCCTCGTTGGAGGATGAAGTTGCTAAATTGAGGGCTTTGAATCAGCATTTGATGAAGAAGTTGCAGGGTCAAGCAGCGCTGGAGGCTGAGGTTGCGAGACTCAAGTGTTTGCTTGTGGATATCCGGGGTAGAATTGAAGGGGAGATTGGATCTTTCCCTTACCAGAAACCCGTGAATCATAACCTGTCCAATCCAAACTTCCCCGGTGCTTACGTGATGAATCCATGTAATATGCAGTGTGAGGATCAGGTTTATTGCCTTCATCCGGGGGTTGATGGCAGCGGAAATGGAGAAGGTGCTGTGATAAATGGACAGGTTTTGGGTGCTTGTGAATTTGAAAGTCTTCAGTGTCTGGCAAATCAAGACTCGGGATCAAAAGAGCTACCTGGGTGTGGAGTAGTAGGGAATGTGGCTTTGAATGATATTTCTTCAGGAGCGGCAAAAAGGAAAGGAGTTAGCCGCAAAGAGACATGGAATTGA | 813 | 46.25 | MDDGEIDFSNQEVFSSPNVELPSSCSMDSFFDELLKDTHTCTHTHTCNPPGPDYSHTHTCFHVHTKILSASTEDNIVTDDTAESTEKKSKKRPLGNREAVRKYREKKKARAASLEDEVAKLRALNQHLMKKLQGQAALEAEVARLKCLLVDIRGRIEGEIGSFPYQKPVNHNLSNPNFPGAYVMNPCNMQCEDQVYCLHPGVDGSGNGEGAVINGQVLGACEFESLQCLANQDSGSKELPGCGVVGNVALNDISSGAAKRKGVSRKETWN | 270 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 3530153 | 3531568 | - | evm.model.ptg000013l.470 | HCH7g0470 | 547755 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH7g0470 | 270 | SUPERFAMILY | Leucine zipper domain | 88 | 134 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH7g0470 | 270 | Coils | Coil | 97 | 131 | - | - | |
HCH7g0470 | 270 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 86 | 133 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH7g0470 | 270 | PANTHER | CCAAT/ENHANCER BINDING PROTEIN | 1 | 177 | IPR031106 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER) | |
HCH7g0470 | 270 | SMART | brlzneu | 84 | 151 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH7g0470 | 270 | CDD | bZIP | 90 | 143 | - | - | |
HCH7g0470 | 270 | Gene3D | - | 77 | 152 | - | - | |
HCH7g0470 | 270 | Pfam | Basic region leucine zipper | 85 | 141 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0534 | HCH-Chr1:54315124 | HCH7g0470 | HCH-Chr7:3530153 | 3.40E-22 | dispersed | |
HCH2g0558 | HCH-Chr2:49429474 | HCH7g0470 | HCH-Chr7:3530153 | 7.80E-74 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33855 | PF07716 | bZIP_2 | 5.10E-14 | CL0018 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH7g0470 | K25785 | - | csv:101208161 | 465.692 |