Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0514 ATGGGTGATACTGAAGATGCTCATAGTGATACTATAAGAAATCTTCAATGTTCATTTGGATCATCATCATCATCATCTTCAGCTGTAAATCACCACCTTTTCTCTATGGATCAACTTAGAATTTCCCCAATGAATTGTTCACAAGTTCGTTCACAGCATTTTCAGACCAATTTTCTTGGAAGGGTTGGGATTCCTCCTCATCCCAACCTGCCGTCACCACAGATCCCGCCTATCTCGCCGTATTCTCAGATCCCGATCTCGCGACCGATGAGCCAGCAGAGTTTTAACCCCGTCCCTACTCATTCACGATCCTTGTCTCAGCCTTCGTTTTTTAGTCTTGATTCTTTGCCCCCGTTGAGCCCGTCTCCGTTTCGTGACTCCCCGTCAACGTCGAATTCAGATCAGGTTTCAGCAGATACGTTGATGGAGGATAGGGATACTAATTCGCATTCCATGTTGCCTCCATCGCCTTATATGAGGGGTAATTCTGCTAAGATTGGAGACAGTTTACCGCCTCGTAAAGCACATAGGCGGTCTAATAGTGATATCCCGTTTGGATTGTCTACGATGATTCAGTCTTCGAATCCACATTTCCCATTAAGTGGCTCAGGTGGCTTGGATCGATCGATGTCCAGTAAAGAGAATTCAGGCATTTTGAAGCCGGTCAGCCACTTTGTGAAAAGAGAACCTAGTTTGGAGAAAGGTGGTGGTAACAATTTGGAAGGAATGGGTGAGAGGAAATCCGAAGGGGAAACTGTGGATGACTTGTTCTCTGCTTATATGAATTTGGATAATATCGATTTGTTCAACTCGTCGAGGAATAATGATAAGAATGGTCGTGAGAATCGGGAAGATTTGGATAGTAGAGGTAGTGGAACAAAGACAAATGGAGGTGATAACAGTGACAATGAAGCAGAAAGCAGCGTAAATGAAAGTGGGGATAATATGCAGTCGGTTGGATTTAATTCATCTGCTGAGAAGAGGGAAGGGGTCAAAAGGAGTGTGGGGGGAGATGTTGCTCCGACTACCAGGCATTACCGAAGTGTCTCCATGGATAGTTTCATGGACAAGTTGCAGTTTGGTGATGAGTCGCCCAAAATACCACCTTCACCCGGTGTTCGTCCTGGACAAATGTCTCCAAACAATTTAGTTGATGGTATTTCAACTCCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAAAAAATAATGGCAAATGACAAACTTGCTGAGATTGCATTAGCTGATCCAAAGCGTGCTAAAAGGATCTTGGCGAACCGTCAATCGGCTGCTCGCTCAAAAGAACGAAAGATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAGGCTACCACACTTTCTGCCCAGCTCACACTTCTACAGAGAGACTCAGTTGGACTTACAAACCAGAACAACGAGCTGAAGTTTCGTCTTCAAGCCATGGAACAACAAGCACAACTGCGGGATGCTCTAAACGAAGCCTTGACTGCGGAAGTTCAGAGATTGAAGATTGCTACAGCAGAACTAAATGGACAATCTCATCCTTCTAAAGGGGTAACCATGAATCACCATAGCCTTCAGCTTCAACTTCAGCAGCAACAGCAGCAGCAGCAGAATGGCAACGCAACCGCAAAACCCGAGTCGAATCAATAA 1683 45.04 MGDTEDAHSDTIRNLQCSFGSSSSSSSAVNHHLFSMDQLRISPMNCSQVRSQHFQTNFLGRVGIPPHPNLPSPQIPPISPYSQIPISRPMSQQSFNPVPTHSRSLSQPSFFSLDSLPPLSPSPFRDSPSTSNSDQVSADTLMEDRDTNSHSMLPPSPYMRGNSAKIGDSLPPRKAHRRSNSDIPFGLSTMIQSSNPHFPLSGSGGLDRSMSSKENSGILKPVSHFVKREPSLEKGGGNNLEGMGERKSEGETVDDLFSAYMNLDNIDLFNSSRNNDKNGRENREDLDSRGSGTKTNGGDNSDNEAESSVNESGDNMQSVGFNSSAEKREGVKRSVGGDVAPTTRHYRSVSMDSFMDKLQFGDESPKIPPSPGVRPGQMSPNNLVDGISTPFSLEFGNGEFSGAELKKIMANDKLAEIALADPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKIATAELNGQSHPSKGVTMNHHSLQLQLQQQQQQQQNGNATAKPESNQ 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3901214 3903605 - evm.model.ptg000013l.514 HCH7g0514 547799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0514 560 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 421 484 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g0514 560 Coils Coil 502 522 - -
HCH7g0514 560 MobiDBLite consensus disorder prediction 537 560 - -
HCH7g0514 560 SUPERFAMILY Leucine zipper domain 423 474 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g0514 560 MobiDBLite consensus disorder prediction 227 250 - -
HCH7g0514 560 MobiDBLite consensus disorder prediction 291 324 - -
HCH7g0514 560 Pfam bZIP transcription factor 423 477 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g0514 560 MobiDBLite consensus disorder prediction 64 137 - -
HCH7g0514 560 MobiDBLite consensus disorder prediction 268 344 - -
HCH7g0514 560 MobiDBLite consensus disorder prediction 274 290 - -
HCH7g0514 560 CDD bZIP_plant_RF2 424 473 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g0514 560 MobiDBLite consensus disorder prediction 66 83 - -
HCH7g0514 560 SMART brlzneu 419 483 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g0514 560 Gene3D - 422 474 - -
HCH7g0514 560 Coils Coil 439 494 - -
HCH7g0514 560 MobiDBLite consensus disorder prediction 84 116 - -
HCH7g0514 560 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 156 549 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH7g0514 560 FunFam probable transcription factor PosF21 422 475 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0227 HCH-Chr13:1497514 HCH7g0514 HCH-Chr7:3901214 4.50E-39 dispersed
HCH2g0977 HCH-Chr2:53076680 HCH7g0514 HCH-Chr7:3901214 1.70E-27 dispersed
HCH7g0262 HCH-Chr7:1824321 HCH7g0514 HCH-Chr7:3901214 2.40E-09 dispersed
HCH4g0779 HCH-Chr4:5022896 HCH7g0514 HCH-Chr7:3901214 1.30E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33859 PF00170 bZIP_1 7.20E-09 CL0018 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0514 - - - 0.0