Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0529 ATGAAGATCCGTTGCGATGTGTGTGATAAAGCAGAAGCTTCCGTTTTCTGCTCCGCCGATGAAGCCGCTCTCTGCCATGGTTGCGATCTCCATGTTCATCAAGCCAACAAGCTCGCCGGAAAACACTCTCGCTTCTCCCTTCTTCAACCAATCAAAGCAGAGTCCCCTCTCTGTGATATCTGTCAAGAAAGGCGAGCGCTGGTGTTTTGTCAAGAAGATAGAGCAATAGTTTGCAGAGAATGCGACATTTCAATACACGAAGCAAACGAACACACACAAAAACACAACAGATTTCTTCTAACAGGTGTGAAGCTTTCTTCCACTTGTTTTTCCTACCAAACATCTTCGTCTTCCAATGCCTCTCAAGCATCTCTTGATGTTAAATTTGGAAGCTCACACACTTGCAGTAGTAAGAGCTCCGAAATGAACCAAATATCCACTACTTCTCATTCCGCCCAGAAACTCGTTCCCGCGAAAACAGAATGTTATGCAAAGCTTGAAGACGGTCAGGCTAGCGATGCCGATGGCGGTTCGTTTTCGACGAGTAGTATATCGGAGTATTTGGAGACATTGCCCGGGTGGTGTGTGGAGGAGTTACTTGATCCTTCTGTTGCTGCTGCCAATCGTTTCTTTTGA 636 46.07 MKIRCDVCDKAEASVFCSADEAALCHGCDLHVHQANKLAGKHSRFSLLQPIKAESPLCDICQERRALVFCQEDRAIVCRECDISIHEANEHTQKHNRFLLTGVKLSSTCFSYQTSSSSNASQASLDVKFGSSHTCSSKSSEMNQISTTSHSAQKLVPAKTECYAKLEDGQASDADGGSFSTSSISEYLETLPGWCVEELLDPSVAAANRFF 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4055289 4057356 - evm.model.ptg000013l.529 HCH7g0529 547814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0529 211 FunFam B-box zinc finger protein 21 1 98 - -
HCH7g0529 211 CDD Bbox1_BBX-like 5 47 IPR049808 -
HCH7g0529 211 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
HCH7g0529 211 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
HCH7g0529 211 CDD Bbox1_BBX-like 57 100 IPR049808 -
HCH7g0529 211 Gene3D Classic Zinc Finger 1 100 - -
HCH7g0529 211 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
HCH7g0529 211 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270(InterPro)
HCH7g0529 211 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270(InterPro)
HCH7g0529 211 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
HCH7g0529 211 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 201 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0156 HCH-Chr12:825143 HCH7g0529 HCH-Chr7:4055289 2.20E-45 dispersed
HCH14g0629 HCH-Chr14:34995784 HCH7g0529 HCH-Chr7:4055289 1.90E-19 dispersed
HCH2g0486 HCH-Chr2:48418923 HCH7g0529 HCH-Chr7:4055289 1.20E-45 wgd
HCH4g0768 HCH-Chr4:4955398 HCH7g0529 HCH-Chr7:4055289 5.90E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33862 PF00643 zf-B_box 2.50E-07 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0529 - - - 0.0