Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH7g0533 | ATGGCTTCCGATTCTTCTCCGATCAATTTCAATACCGGCCCTTCATCGCCCGATGACTCATTCTCTAGCCCTATCGGAAACACGGTCTCTTCCCCCGGTGACGGTTCTCGTCGTAGAAGCCGTCGTCGGTCATCTACTCCTTCGGAATTCGCTACTCCGCCACGTCAACGATCCCGTCTCGCCTCATCGGAAACTACCCCAATACCTACTGAATCTCGCCCCTCCCGAAGAGGGGGTGGACGAAGAGCTTCCGGGACTACTCCGGTTGCGGCCACGCCTACTTCCACAGACGATGTTCTGCCGTCATCAGATGGTGCTGAGGGTTATGATATGGATGAGGACCATCCGACTTTTGTGTGGGGGACGAATATTAGTGTTGACGATGTTAAGGGAGCGATAATTAGGTTTTTGAAGCATTTTCGGGATAGTCGGCTGTCACAATCTGAGGGGGATTTGCATACTGAGGGAAAGTATGCGGATGCTATTAAAAGAGTTCTTGAAATTGAAGGGGATTCACTTGATGTGGATGCGCAGGATGTGTTTAATTACGATACGGATTTGTATACAAAGATGGTGAGGTATCCTCTTGAGGTTCTTGCTATTTTCGATATTGTTTTGATGGAAATGGTGCCTCAAATCAATCCATTGTTTGAAAAGCATATTCAAACTAGGATTTTTAATCTCAAAACTTCTACTGCAATGAGAAATCTTAACCCATCCGATATCGAGAGAATGGTATCGTTGAAAGGAATGATTATCCGGAGTAGTTCGATAATTCCTGAGATCAGGGAAGCGATATTTAGATGTCTTGTATGTGGATACTACACTGACCCTGTAGCCATAGAGAGAGGACGGATAACTGAGCCCACGATATGCTTGAAGGAAGAGTGTCAAGCAAGGAACTCCATGACGCTTGTTCACAATCGATGCAGGTTTGCCGATAAGCAGATTGTGCGGCTTCAGGAGATGCCTGATGATATACCTGACGGAGGGACACCTCATACTGTAAGCTTGTTAATGCATGACAAGCTGGTTGATTCTGGAAAGCCTGGTGACAGAGTTGAGGTCACTGGGATTTACAGGGCCATGAGCGTGAGAGTTGGACCGACACAAAGAACTGTAAAGTCATTGTTCAAGACTTATATTGATTGTCTTCATATAAAGAAGACCGATAAATCAAGAATGGTGGCAGATGATATGATGGAGGTTGAGAACCGGTCGGGTGGAAACGTGGATGATCTCTCTTTTGATGAAGCAAAAGTGGAAGAGTTGAAAGAACTGTCCAAAAAGCCTGACATATATGACAAACTAACCAGGTCATTGGCACCTAATATTTGGGAGCTGGATGATGTTAAGAAGGGCCTTCTTTGCCAGCTTTTTGGTGGGAATGCTTTGAAATTAGCATCTGGTGCAAGCTTTCGTGGAGATATTAACATTCTTCTCGTTGGTGATCCTGGAACCAGCAAGTCTCAGCTTCTCCAATATATACATAAACTATCTCCCCGTGGCATTTACACTAGTGGAAGGGGTAGCTCTGCTGTTGGTTTGACTGCTTATGTCACCAAAGATCCTGAAACAGGGGAGACTGTACTGGAGAGTGGGGCCTTGGTTTTGAGTGACCGGGGCATATGCTGCATTGATGAATTTGACAAAATGTCCGATAATGCAAGGAGCATGTTGCATGAGGTGATGGAGCAACAAACCGTTTCAATAGCAAAGGCTGGAATTGTTGCATCCCTTAATGCCAGGACTTCAGTATTAGCTTGTGCAAATCCTAGTGGTTCACGCTATAATCCTCGCCTATCCGTGATTGATAACATACACCTTCCTCCTACTTTGTTATCAAGGTTTGACTTGATTTATTTAATTCTGGATAAAGCTGACGAGCAATCGGATAGGCGCCTTGCTAAGCATATTGTTTCACTACACTTTGAGAATTCAGAGAGCGTTGAGCAGGATTTCTTGGACCTTCATACCTTGACTGCATATGTCAGCTATGCTAGAAAGAATATTCACCCAAAATTATCAGATGAGGCAGCCGAAGAGTTGACTAGAGGCTATGTTGATTTGAGGAGAAGAGGGAATTTCCCCGGCAGTAGTAAAAAGGTTATAACAGCCACTCCAAGGCAGATTGAGAGTTTAATACGTCTTAGTGAAGCTCTTGCTCGAATTCGTTTCTCAGAATGGGTTGAAAAGGTTGATGTAATTGAGGCATTCCGGCTTCTGGAAGTTGCAATGCAACAGTCTGCAACCGATCATTCTACCGGGACCATTGATATGGATCTAATTACAACCGGAGTCTCAGCAAGTGAAAGAATACGGAGAGAGACTCTATTAACCGCAACTCGCAACATCATTATGGACAAGATGCAGCTTGGGGGGCCTTCCATGCGCCTGGCAGAGTTACTTGACGAGCTGAAGAAGCAGAATCCTGACAATGAAGTACACCTCAACAATCTTCGGAATGCGGTTTCGACACTTGCTAGTGAAGGTTTTGTATCATTCCATGGTGACAGCATAAAGAGAGTATGA | 2532 | 44.83 | MASDSSPINFNTGPSSPDDSFSSPIGNTVSSPGDGSRRRSRRRSSTPSEFATPPRQRSRLASSETTPIPTESRPSRRGGGRRASGTTPVAATPTSTDDVLPSSDGAEGYDMDEDHPTFVWGTNISVDDVKGAIIRFLKHFRDSRLSQSEGDLHTEGKYADAIKRVLEIEGDSLDVDAQDVFNYDTDLYTKMVRYPLEVLAIFDIVLMEMVPQINPLFEKHIQTRIFNLKTSTAMRNLNPSDIERMVSLKGMIIRSSSIIPEIREAIFRCLVCGYYTDPVAIERGRITEPTICLKEECQARNSMTLVHNRCRFADKQIVRLQEMPDDIPDGGTPHTVSLLMHDKLVDSGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKSRMVADDMMEVENRSGGNVDDLSFDEAKVEELKELSKKPDIYDKLTRSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIVASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQSDRRLAKHIVSLHFENSESVEQDFLDLHTLTAYVSYARKNIHPKLSDEAAEELTRGYVDLRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKVDVIEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERIRRETLLTATRNIIMDKMQLGGPSMRLAELLDELKKQNPDNEVHLNNLRNAVSTLASEGFVSFHGDSIKRV | 843 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 4090494 | 4095503 | + | evm.model.ptg000013l.533 | HCH7g0533 | 547818 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH7g0533 | 843 | MobiDBLite | consensus disorder prediction | 1 | 112 | - | - | |
| HCH7g0533 | 843 | Pfam | MCM P-loop domain | 421 | 643 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH7g0533 | 843 | SUPERFAMILY | Nucleic acid-binding proteins | 151 | 384 | IPR012340 | - | |
| HCH7g0533 | 843 | Pfam | MCM N-terminal domain | 133 | 227 | IPR027925 | - | |
| HCH7g0533 | 843 | Gene3D | - | 234 | 373 | IPR012340 | - | |
| HCH7g0533 | 843 | Gene3D | - | 411 | 751 | IPR027417 | - | |
| HCH7g0533 | 843 | FunFam | DNA helicase | 414 | 752 | - | - | |
| HCH7g0533 | 843 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 562 | 575 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH7g0533 | 843 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 613 | 621 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH7g0533 | 843 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 474 | 489 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH7g0533 | 843 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 534 | 548 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH7g0533 | 843 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 586 | 598 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH7g0533 | 843 | MobiDBLite | consensus disorder prediction | 87 | 101 | - | - | |
| HCH7g0533 | 843 | MobiDBLite | consensus disorder prediction | 46 | 72 | - | - | |
| HCH7g0533 | 843 | SMART | AAA_5 | 475 | 625 | IPR003593 | GO:0016887(InterPro) | |
| HCH7g0533 | 843 | Coils | Coil | 803 | 823 | - | - | |
| HCH7g0533 | 843 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 747 | 756 | IPR008047 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| HCH7g0533 | 843 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 449 | 460 | IPR008047 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| HCH7g0533 | 843 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 307 | 319 | IPR008047 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| HCH7g0533 | 843 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 256 | 269 | IPR008047 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| HCH7g0533 | 843 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 595 | 612 | IPR008047 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| HCH7g0533 | 843 | FunFam | DNA helicase | 261 | 313 | - | - | |
| HCH7g0533 | 843 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 122 | 817 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902975(PANTHER) | |
| HCH7g0533 | 843 | Pfam | MCM OB domain | 234 | 363 | IPR033762 | - | |
| HCH7g0533 | 843 | CDD | MCM4 | 436 | 745 | - | - | |
| HCH7g0533 | 843 | ProSitePatterns | MCM family signature. | 542 | 550 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| HCH7g0533 | 843 | SMART | mcm | 230 | 747 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH7g0533 | 843 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 444 | 759 | IPR027417 | - | |
| HCH7g0533 | 843 | ProSiteProfiles | MCM family domain profile. | 433 | 639 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH7g0533 | 843 | Gene3D | - | 752 | 836 | IPR036388 | - | |
| HCH7g0533 | 843 | Pfam | MCM AAA-lid domain | 659 | 745 | IPR041562 | - | |
| HCH7g0533 | 843 | Gene3D | - | 123 | 228 | - | - | |
| HCH7g0533 | 843 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| HCH7g0533 | 843 | Gene3D | - | 261 | 313 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH11g0249 | HCH-Chr11:2249990 | HCH7g0533 | HCH-Chr7:4090494 | 5.00E-72 | dispersed | |
| HCH14g1202 | HCH-Chr14:38636056 | HCH7g0533 | HCH-Chr7:4090494 | 1.10E-98 | dispersed | |
| HCH4g1075 | HCH-Chr4:6953365 | HCH7g0533 | HCH-Chr7:4090494 | 4.70E-98 | dispersed | |
| HCH5g1143 | HCH-Chr5:38089525 | HCH7g0533 | HCH-Chr7:4090494 | 9.30E-91 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH7g0533 | K02212 | - | csv:101211850 | 1475.69 |