Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0534 ATGGGGGATAGCCGTGGAACCGGAGGATGCTGTCCGCCGATGGATCTTTTCCGTTCAGAGCCGATGCAGCTCGTCCAGCTCATCATTCCTATTGAATCTTCTCATCTCACCATCTCCTACCTCGGCGATCTCGGTCTTCTCCAATTCAAAGATTTAAATGCTGAGAAAAGCCCATTCCAGCGTACGTATGCTGCACAGATTAAAAGATGTGGAGAGATGGCACGAAAAGTGCATTTTTTCAAGGAGCAGATGTCGAAGACTGGAATTTTAACCAAAAGCTCCTTGCCACAAGATAATATCACTATAGATGATCTTGAGGTCAAACTTGGTGAACTTGAGGCGGAGCTGGTTGAAATAAATGCTAATAATGAGAAGCTACAACGTTCCTATAATGAACTTGCAGAGTATAAGCTTGTTCTGCAGAAGGCTGGCGAGTTTTTTAATGCAGCACAAAGCAGTGCCTTTGAGCAGCAGAGAGAATATGAATCACAACGAGTTGGTGGAGATTCAATAGAAATTCCTTTGTTGTTGGATCAAGAAGTATCTGCTGATCAGTCAAAACCAGTTAATTTGGGATTTCTCTCTGGCCTTGTTCCTCGGGAAAAGTCTATGGCATTTGAGAGGATACTATTTCGTGCCACCAGGGGTAATGTGTTTCTGAAGCAGGCTGTAGTCGAAGATCCTGTCATTGATCCTGTTTCTGGAGATAAGATTGAGAAAAACGTGTTTGTGGTTTTCTACTCTGGAGAAAGAGCAAAGAATAAAATTCTTAAAATATGTGAGGCTTTTGGAGCAAACCGTTACCCTTTCACCGAGGACTTTGCAAAACAAGCACAAATGATTACTGAGGTTTCTGGAAGACTGTCTGAGCTGAAGACTACAATAGATTTGGGACTGCTGCACCGGGGCAATCTGTTGCAGACTATTGGAGAACAATTTGAAAATTGGAGTCTTCTGGTGAGAAAGGAAAAATCCATATACCATATCTTGAACATGCTTAGCCTTGATGTAACCAAAAAGTGTCTGGTGGCTGAGGGGTGGGGTCCTGTTTTTGCAACAAAACAGATTCAAGATGCACTGGAGCGGGCAGCTTTTGATTCCAACTCTCAAGTTGGGCCAATATTTCAGGTTTTGCTAACAACAGAAGCACCACCTACTTATTTCCGGACAAACAAATTCACTTCTGCTTTTCAAGAAATTGTTGATGCATATGGGGTGGCAAAGTATCAAGAAGCCAATCCTGGTGTATACACCGTTGTCACATTTCCATTTCTTTTTGCTGTCATGTTTGGTGATTGGGGCCATGGACTATGTTTATTACTTGCAACACTGTATTTTATATTGCGGGAAAAAAAACTTTCTTCTCAGAAGCTTGGAGATATCACTGAAATGGCCTTTGGTGGACGCTATGTCATTTTGATGATGTCACTGTTCTCGATATACACAGGTCTAATCTATAATGAATTCTTTTCAGTCCCATTTGGACTCTTTGGTTCCTCCGCATATGCATGCCGCAGTGCTGATTGCAGTGATGCCTCTTCAATGGGGTTGATCAAGGTGCGTTCTACATATCCATTTGGCTTAGATCCTGTATGGCATGGTACTCGAAGTGAGCTTCCATTTCTCAACTCTTTGAAAATGAAAATGTCAATCCTCCTTGGAGTTGCACAAATGAACCTTGGAATTATAATAAGCTATTTCAATGCTACATTTTTTCGGAACAGTATCAATATCTGGTTCCAATTTCTGCCACAGATTATATTTTTGAACAGTCTTTTTGGCTATCTTTCCCTTCTCATCATATTAAAGTGGTGCACTGGTTCAAAAGCTGATTTGTACCACGTAATGATATACATGTTTCTGGGTCCCACTGAAGAGCTGGGTGAAAATCAGCTTTTTTCCGGACAGAGAAATGTTCAGATTGTGCTACTTTTACTGGCCTTTGTTGCTGTACCATGGATGCTGCTTCCAAAGCCTTTTCTTTTGAAGAGACAACACCAACAGAGGTTCCAGGGCCAATCTTATGCACCACTTCCGAGTGCAGATGAGTCTCTTGAGTTGGATTCACATCACGATTCACATGGTCATGAGGAGTTTGAGTTCAGTGAAGTTTTTGTGCATCAACTTATACATACCATTGAATTTGTACTTGGAGCAGTGTCAAATACAGCTTCCTATCTTCGTCTCTGGGCTTTAAGTCTTGCGCACTCCGAGTTGTCAAGTGTATTTTATGAAAAGGTTCTCATAATGTCTTATGGGTTCAACAATATCATAATCCTCATAGTGGGCATCATTGTTTTCATTTTTGCTACCGTCGGTGTGTTACTACTGATGGAAACTTTGAGTGCCTTCCTTCATGCACTGCGTCTTCATTGGGTGGAGTTCCAAAACAAATTTTACGAGGGAGACGGGTATAAATTCTTTCCCTTTTCATTTGCATTGCTCGGTGAAGACGAAGAATAA 2463 41.53 MGDSRGTGGCCPPMDLFRSEPMQLVQLIIPIESSHLTISYLGDLGLLQFKDLNAEKSPFQRTYAAQIKRCGEMARKVHFFKEQMSKTGILTKSSLPQDNITIDDLEVKLGELEAELVEINANNEKLQRSYNELAEYKLVLQKAGEFFNAAQSSAFEQQREYESQRVGGDSIEIPLLLDQEVSADQSKPVNLGFLSGLVPREKSMAFERILFRATRGNVFLKQAVVEDPVIDPVSGDKIEKNVFVVFYSGERAKNKILKICEAFGANRYPFTEDFAKQAQMITEVSGRLSELKTTIDLGLLHRGNLLQTIGEQFENWSLLVRKEKSIYHILNMLSLDVTKKCLVAEGWGPVFATKQIQDALERAAFDSNSQVGPIFQVLLTTEAPPTYFRTNKFTSAFQEIVDAYGVAKYQEANPGVYTVVTFPFLFAVMFGDWGHGLCLLLATLYFILREKKLSSQKLGDITEMAFGGRYVILMMSLFSIYTGLIYNEFFSVPFGLFGSSAYACRSADCSDASSMGLIKVRSTYPFGLDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIIISYFNATFFRNSINIWFQFLPQIIFLNSLFGYLSLLIILKWCTGSKADLYHVMIYMFLGPTEELGENQLFSGQRNVQIVLLLLAFVAVPWMLLPKPFLLKRQHQQRFQGQSYAPLPSADESLELDSHHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLIMSYGFNNIIILIVGIIVFIFATVGVLLLMETLSAFLHALRLHWVEFQNKFYEGDGYKFFPFSFALLGEDEE 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4096968 4108566 + evm.model.ptg000013l.534 HCH7g0534 547819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0534 820 Coils Coil 102 136 - -
HCH7g0534 820 Pfam V-type ATPase 116kDa subunit family 40 812 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH7g0534 820 PIRSF ATP6V0A1 12 820 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
HCH7g0534 820 PANTHER VACUOLAR PROTON ATPASES 14 817 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1144 HCH-Chr2:54103023 HCH7g0534 HCH-Chr7:4096968 3.90E-303 transposed
HCH4g0766 HCH-Chr4:4922579 HCH7g0534 HCH-Chr7:4096968 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0534 K02154 - csv:101211364 1428.69