Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0547 ATGAATAGAGCTTTGCCAGAGATGTTACACTGCTTGAATGCAACTGGGAACTTTCCTGATTCCATGACTGTTTTGGAGAGGCAGAGATCAAGGATCAAATGGCAACAAGATCAGCTTATGCAGCAGCAGCAGCAGAATGAGAATGAGAATGGTGATTATTTGTATTGTAGGACGGATTTCGGTAGCGGTACTATGTTTCCGCTACCGGATCAGTTGCCGAGCTTTCAGGGGTTCTTGAATGGCGGTGGTGATTCGTCGCTTGTTGAGATGGTAATGGCGGCGGTGAAACCGGACCCGGGATTGGATGATGGTTGGACTGATATGAGGAAGTTTGATACTGCAGCTGGAATGGAGTGTGGAGCTGCTATGCTGGTGAATGCCGCTGGTTATGACATCAATTCTTCGATTTCGAGAACTTCGAGCTGCCCGCCTGCCGTTGCGGCTGCGGTGGAGGGTAGAGGCGGTAAAGAGTCGAATGCGGCGGAGAAGTTAATGTCTCCGGTTGGAAAAGAGAGTTTGAAGAAAAGGAAAGCTGATAAAGCACATAGCACCAAGGGGATTGGTGAAGATGATGGAAAAGAGAAGAGAATCAAAGCAAGTACAGAAGAAGGAGAATCAAAAACAACAGATCAAAACAGCACAAAAAACAACTCCACAACAACAACAACAAACAACAGAGAAACATCAGCGGATACATCAAAAGAGAATTCCAAGGCTTCAGAAGTTCAAAAACCAGACTACATTCATGTCCGGGCTAGGCGTGGACAAGCCACAGATAGCCATAGCTTAGCAGAAAGAGCTAGAAGGGAAAAAATCAGTGAAAGAATGAAATATTTACAAGATTTGGTACCAGGATGTAACAAAATCACTGGAAAAGCAGGAATGCTTGATGAAATCATCAATTATGTGCAATCTCTACAAAGACAAGTAGAGTTCTTGTCCATGAAACTAGCAGCCGTCAACCCCAGATTTGATTTCAATCTCGAAGATCTCTTCACCAAAGAGGCATTTCCTACATGCACAGGCAATTTTCCATCAATGGGGATTTCCTCAGAAATCACAGATCCTTCTTCCTTCGTACAATATAACCCAAATCCTCAACAAATGATCCCTAATTGTGGATTGGAAATGGGTATAAATCCTTCTGATATGGGTCTTCGTAGAGCAATCAGTGCTCCAGTTTCTTTCCCGGAAAATTTTCTGGATTCATCTTGTCTCACACAATTTCAAGGTTCTTCAGCTTGGGATATTGATTTGCAGAATCTGTATAATTTAGGGTTTGATCAAGGAAGATCAAATCCCTTTTCTTCTCATCCATATTCAGGTTCAATGGAAGGAAGCAACATAAAGATGGAAATGTGA 1362 42.88 MNRALPEMLHCLNATGNFPDSMTVLERQRSRIKWQQDQLMQQQQQNENENGDYLYCRTDFGSGTMFPLPDQLPSFQGFLNGGGDSSLVEMVMAAVKPDPGLDDGWTDMRKFDTAAGMECGAAMLVNAAGYDINSSISRTSSCPPAVAAAVEGRGGKESNAAEKLMSPVGKESLKKRKADKAHSTKGIGEDDGKEKRIKASTEEGESKTTDQNSTKNNSTTTTTNNRETSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRFDFNLEDLFTKEAFPTCTGNFPSMGISSEITDPSSFVQYNPNPQQMIPNCGLEMGINPSDMGLRRAISAPVSFPENFLDSSCLTQFQGSSAWDIDLQNLYNLGFDQGRSNPFSSHPYSGSMEGSNIKMEM 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4253811 4256425 - evm.model.ptg000013l.547 HCH7g0547 547832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0547 453 MobiDBLite consensus disorder prediction 168 209 - -
HCH7g0547 453 MobiDBLite consensus disorder prediction 210 230 - -
HCH7g0547 453 MobiDBLite consensus disorder prediction 434 453 - -
HCH7g0547 453 FunFam Basic helix-loop-helix transcription factor 253 325 - -
HCH7g0547 453 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 254 325 IPR036638 GO:0046983(InterPro)
HCH7g0547 453 CDD bHLH_AtBPE_like 246 331 - -
HCH7g0547 453 MobiDBLite consensus disorder prediction 152 263 - -
HCH7g0547 453 Coils Coil 25 45 - -
HCH7g0547 453 MobiDBLite consensus disorder prediction 231 263 - -
HCH7g0547 453 SMART finulus 262 312 IPR011598 GO:0046983(InterPro)
HCH7g0547 453 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 156 360 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
HCH7g0547 453 Pfam Helix-loop-helix DNA-binding domain 260 307 IPR011598 GO:0046983(InterPro)
HCH7g0547 453 Gene3D - 253 325 IPR036638 GO:0046983(InterPro)
HCH7g0547 453 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 256 306 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0847 HCH-Chr1:57085334 HCH7g0547 HCH-Chr7:4253811 5.90E-40 dispersed
HCH7g0547 HCH-Chr7:4253811 HCH7g0939 HCH-Chr7:37872082 7.30E-41 dispersed
HCH11g0591 HCH-Chr11:12166324 HCH7g0547 HCH-Chr7:4253811 2.80E-37 transposed
HCH2g0451 HCH-Chr2:47976348 HCH7g0547 HCH-Chr7:4253811 5.90E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33864 PF00010 HLH 1.30E-06 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0547 - - - 0.0