Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0557 ATGGCGGTTTCCGGTAATCACACCACCGAAACTCATCCTTCTCACGATTCAGCTTCCAAATCTTCATTTTCCAGCTTTAAAGTCTACGCCGCGATCGGAATCATCGCTGCATGTTTAATCGCAGTTTTCACTCTGGTCTTCATCTTCTTCTTCCGCAAAAACAGAAACTCCTCGAAAAGCCGCAAGTTGCGAGTAAAACACAGCTCAGGATTGATTCCATTAGTTTCCAAAGATATTGTGGAAATCAAACCTCCCGATCGAATTGAAGATTGCGAGAAAGGAGAAATCATGATTCTGGAGAATTTGAAAGTAAAACCTAAGAAGGATGTTGAAATCGATTCCGGAATAGGTAAAAAGAGTGGAGAGAGTGACGTGTCTTGTGGAAGCCGCGGTGACGTGTCGGTGGAAGAGCAGAATTTAGGGTGGGGACGGTGGTATAATTTGAAGGAATTGGAAATGGCGACGTGTGGATTTGTAGAAGAGAATGTCATCGGAGAAGGTGGTTATGGAATTGTGTATAAAGGGATTTTGATCGATGGATCCGTCATAGCTGTCAAGAATCTTCTTAATAACAAGGGTCAGGCAGAGAAAGAGTTCAAGGTTGAAGTAGAGGCCATTGGGAAAGTAAGGCATAAGAACTTGGTTGGTCTAATTGGTTATTGTGCAGAAGGTGTACAGAGGATGCTTGTGTATGAATTTGTTGACAATGGTAACTTGGAGCAGTGGTTACATGGCGATGTGGGGCCGGTTAGCCCTCTAACATGGGAGATTAGGATGAGGATAGCACTTGGGACAGCAAAGGGATTGGCCTATTTGCACGAGGGTTTGGAACCAAAAGTTGTGCACCGGGATGTAAAATCCAGCAACATTCTTTTAGATAGAAAATGGAATGCAAAAGTGTCCGACTTTGGACTTGCAAAGCTCTTACAATCTGAAGCCAGCTACGTAACTACTCGAGTAATGGGAACATTTGGATATGTTTCTCCCGAGTATGCAAGTACGGGCATGCTTAATGAGGGAAGTGATGTATATAGTTTCGGGGTTCTACTTATGGAGATCATCACTGGTAGAAGCCCAATTGACTATTCCAGACCCCCTGGGGAGATGAACTTGGTGGACTGGTTTAAAGGAATGGTGTCGAACCGACGTGGTGAAGAGGTTGTGGATCCTTTGATTGAGGTTCAGCCCTCTCCAAGAGCTTTAAAGCGAGTATTGCTTATCTGTCTCCGCTGCATTGACTTGGATGCGAATAAGAGACCAAAGATGGGACAAATTGTTCATATGCTAGAGGCAGATGACTTCCCTTATCGTTCAGAGCTCCGATCTGCTCGAGATAAAGAACCCCATTCGTCTCGTTTAGACGTTCCTGGTAAATTTCCATTGAAGCATGCTGGTGTAGATGATATGGAATCAAGAAAGAGATAA 1425 44.0 MAVSGNHTTETHPSHDSASKSSFSSFKVYAAIGIIAACLIAVFTLVFIFFFRKNRNSSKSRKLRVKHSSGLIPLVSKDIVEIKPPDRIEDCEKGEIMILENLKVKPKKDVEIDSGIGKKSGESDVSCGSRGDVSVEEQNLGWGRWYNLKELEMATCGFVEENVIGEGGYGIVYKGILIDGSVIAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLIGYCAEGVQRMLVYEFVDNGNLEQWLHGDVGPVSPLTWEIRMRIALGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRKWNAKVSDFGLAKLLQSEASYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKGMVSNRRGEEVVDPLIEVQPSPRALKRVLLICLRCIDLDANKRPKMGQIVHMLEADDFPYRSELRSARDKEPHSSRLDVPGKFPLKHAGVDDMESRKR 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4445558 4449022 + evm.model.ptg000013l.557 HCH7g0557 547842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0557 474 Gene3D Transferase(Phosphotransferase) domain 1 234 442 - -
HCH7g0557 474 FunFam Putative receptor-like serine/threonine-protein kinase 234 444 - -
HCH7g0557 474 CDD STKc_IRAK 164 430 - -
HCH7g0557 474 ProSiteProfiles Protein kinase domain profile. 158 437 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0557 474 Gene3D Phosphorylase Kinase; domain 1 130 233 - -
HCH7g0557 474 Pfam Protein tyrosine and serine/threonine kinase 161 429 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g0557 474 SMART serkin_6 158 429 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0557 474 ProSitePatterns Protein kinases ATP-binding region signature. 164 186 IPR017441 GO:0005524(InterPro)
HCH7g0557 474 SUPERFAMILY Protein kinase-like (PK-like) 137 430 IPR011009 -
HCH7g0557 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g0557 474 PANTHER OS01G0323000 PROTEIN 18 447 IPR052232 -
HCH7g0557 474 MobiDBLite consensus disorder prediction 440 474 - -
HCH7g0557 474 MobiDBLite consensus disorder prediction 1 20 - -
HCH7g0557 474 FunFam Probable serine/threonine-protein kinase At1g01540 138 233 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0671 HCH-Chr6:39742926 HCH7g0557 HCH-Chr7:4445558 2.00E-70 dispersed
HCH7g0557 HCH-Chr7:4445558 HCH7g1646 HCH-Chr7:48561545 2.20E-144 dispersed
HCH7g0557 HCH-Chr7:4445558 HCH4g0629 HCH-Chr4:4123666 5.10E-146 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81635 PF07714 PK_Tyr_Ser-Thr 1.60E-45 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0557 - - - 0.0