Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0655 ATGGCTCAGGTTCCACAACAACATCAAATATCGTTTTCGGGTTCTTCTGATCCGGCGGCGAATGGAGGAGGAGGAGCCAATCAGGTTGTGACGACATCGTTATATGTCGGAGATCTTGATTTGAATGTCACTGATTCTCAGCTTTATGATGTTTTTAGTCAAGTGGGTCAAGTTGTTTCTGTTAGGGTTTGTAGGGATTTGGCTTCCCGGCGTTCGCTTGGTTATGGTTATGTCAATTTTAGCAATCCTTTGGATGCTACGAGGGCATTAGAAGTGCTGAACTTCACTCCTTTAAATGGGAGTCCTATTAGAGTTATGTATTCACATCGTGACCCTAGTACACGAAAAAGTGGGTCTGGAAATATTTTTATCAAGAACTTGGACAAGGCAATTGATCATAAAGCATTGCATGATACATTCTCTGCATTTGGGAACATTCTATCCTGCAAGGTTGCTACAGATTCAGCTGGACAGTCCAAAGGCTATGGTTTCGTGCAATTTGACAATGAGGAATCTGCCTTAAAAGCTATAGAAAAGTTGAATGGTATGCTGCTAAATGATAAGCAAGTCTATGTGGGACCCTTCATTCGTAAGCAGGAGAGAGAAAATGTCAGTGAAAAATCAAAATTTAACAATGTTTTCGTGAAGAATCTCTCAGAAACTACGTCGGAAGAAGATTTGAATGGTCTGTTTGCGGAGTTTGGACCAATCACCAGTATTGTAGTGATGAGGGATGGGGATGGAAAATCCAAATGCTTTGGCTTCGTCAACTTTGAGAATGCAGATGATGCTGCCATGTCTGTTGAGGCACTTAATGGAAAGAAGGTTGATGGGAAGGAATGGTATGTAGGCAAAGCCCAGAAGAAATCGGAAAGGGAATCTGAGTTGAAAAATCGATTTGAGCAGACCTTAAAAGAAGTAGTTGATAAGTATCAAGGTGCAAACTTGTATGTCAAGAATTTAGATGATAGCATTGGTGACGATAAACTGAAGGAGTTATTCGCCCCATTTGGTACCGTTACCTCATGCAAGGTTATGCGAGACCCTAATGGGATAAGTAGAGGATCTGGTTTTGTTGCCTTCTCAACTGCTGACGAGGCTAATAGAGCTCTTGCTGAGATGAATGGGAAAATGGTTGTGAGCAAACCTCTTTATGTTGCCCTTGCACAGAGGAAGGAAGAGAGGAAAGCTAGGTTGCAGGCCCAATTTTCGCAAATGCAGCCAATTTCAATGGCTTCTTCAGTTGCTCCTCGTGTGCCTATGTATCCTCCCGGTGGTCCAGGTCTTGGACAACAGATATTCTATGGACAACCTCCACCTACTATAATTCCTTCCCAGCCTGGCTTTGGTTATCAGCAACAGCTTTTACCCGGTATGAGGCCTGGTGGGGCTCCCATGCCAAATTTCTTTATGCCAATGGTTCAGCAGGGCCAACAAGGGCAAAGATCTGGTGGCAGGCGCGCTGGGGGTATTCAGCAAAGCCAGCAGCCTGTTCCATTGATTCAGCCGCAGATGCTTCCAAGGGGACGTGTCTACCGTTACCCTCCTGGACGTGGAATGCCTGATATGCCCATGCCTGGTGTTGCTGGAAGCATGTTCTCTGTTCCTTATGAGATGGGTGGAATGCCACCACGAGATGCAGTACACCCTCAGCCAATTCCTGTTGGTGCTTTGGCTTCTGCTCTTGCAAATGCCACTCCAGACCAGCAAAGAACGATGCTGGGGGAAAATCTCTATCCACTTGTAGAACAAGTGGAGTCGGATAATGCAGCCAAAGTTACGGGCATGCTGTTGGAAATGGACCAAACCGAAGTTTTGCACTTGCTGGAGTCACCAGAGGCTCTGAAATCAAAGGTGGCCGAAGCTATGGAGGTTTTGCGAAACGTTGCTGTTCATCAACAACAGACGGGCAACGCAGCGGATCAATTGGCTTCGCTCTCCTTGACTGACAACAACCTTGATTCCTGA 1968 45.53 MAQVPQQHQISFSGSSDPAANGGGGANQVVTTSLYVGDLDLNVTDSQLYDVFSQVGQVVSVRVCRDLASRRSLGYGYVNFSNPLDATRALEVLNFTPLNGSPIRVMYSHRDPSTRKSGSGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDSAGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFIRKQERENVSEKSKFNNVFVKNLSETTSEEDLNGLFAEFGPITSIVVMRDGDGKSKCFGFVNFENADDAAMSVEALNGKKVDGKEWYVGKAQKKSERESELKNRFEQTLKEVVDKYQGANLYVKNLDDSIGDDKLKELFAPFGTVTSCKVMRDPNGISRGSGFVAFSTADEANRALAEMNGKMVVSKPLYVALAQRKEERKARLQAQFSQMQPISMASSVAPRVPMYPPGGPGLGQQIFYGQPPPTIIPSQPGFGYQQQLLPGMRPGGAPMPNFFMPMVQQGQQGQRSGGRRAGGIQQSQQPVPLIQPQMLPRGRVYRYPPGRGMPDMPMPGVAGSMFSVPYEMGGMPPRDAVHPQPIPVGALASALANATPDQQRTMLGENLYPLVEQVESDNAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMEVLRNVAVHQQQTGNAADQLASLSLTDNNLDS 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6715627 6720637 - evm.model.ptg000013l.655 HCH7g0655 547940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0655 655 SMART rrm2_1 33 106 IPR003954 GO:0003676(InterPro)
HCH7g0655 655 SMART rrm2_1 212 284 IPR003954 GO:0003676(InterPro)
HCH7g0655 655 SMART rrm2_1 315 387 IPR003954 GO:0003676(InterPro)
HCH7g0655 655 SMART rrm2_1 121 193 IPR003954 GO:0003676(InterPro)
HCH7g0655 655 Gene3D - 26 120 IPR012677 -
HCH7g0655 655 FunFam Polyadenylate-binding protein 202 296 - -
HCH7g0655 655 CDD RRM1_I_PABPs 33 112 IPR034364 -
HCH7g0655 655 SUPERFAMILY PABC (PABP) domain 495 646 IPR036053 GO:0003723(InterPro)
HCH7g0655 655 FunFam Polyadenylate-binding protein 118 201 - -
HCH7g0655 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 391 IPR000504 GO:0003723(InterPro)
HCH7g0655 655 Gene3D - 121 208 IPR012677 -
HCH7g0655 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723(InterPro)
HCH7g0655 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 288 IPR000504 GO:0003723(InterPro)
HCH7g0655 655 SUPERFAMILY RNA-binding domain, RBD 32 201 IPR035979 GO:0003676(InterPro)
HCH7g0655 655 SMART poly_2 566 629 IPR002004 GO:0003723(InterPro)
HCH7g0655 655 CDD RRM3_I_PABPs 210 289 - -
HCH7g0655 655 PANTHER RNA BINDING PROTEIN 21 212 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
HCH7g0655 655 FunFam Polyadenylate-binding protein 19 117 - -
HCH7g0655 655 Pfam Poly-adenylate binding protein, unique domain 561 626 IPR002004 GO:0003723(InterPro)
HCH7g0655 655 FunFam Polyadenylate-binding protein 297 402 - -
HCH7g0655 655 CDD RRM2_I_PABPs 118 194 IPR045305 -
HCH7g0655 655 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 554 631 IPR002004 GO:0003723(InterPro)
HCH7g0655 655 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 33 627 IPR006515 GO:0003723(InterPro)
HCH7g0655 655 Gene3D - 209 309 IPR012677 -
HCH7g0655 655 Pfam RNA recognition motif 316 384 IPR000504 GO:0003723(InterPro)
HCH7g0655 655 Pfam RNA recognition motif 213 281 IPR000504 GO:0003723(InterPro)
HCH7g0655 655 Pfam RNA recognition motif 122 190 IPR000504 GO:0003723(InterPro)
HCH7g0655 655 Pfam RNA recognition motif 34 104 IPR000504 GO:0003723(InterPro)
HCH7g0655 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 192 IPR000504 GO:0003723(InterPro)
HCH7g0655 655 MobiDBLite consensus disorder prediction 1 24 - -
HCH7g0655 655 CDD RRM4_I_PABPs 313 391 - -
HCH7g0655 655 Gene3D - 549 632 - -
HCH7g0655 655 SMART rrm1_1 33 106 IPR000504 GO:0003723(InterPro)
HCH7g0655 655 SMART rrm1_1 121 193 IPR000504 GO:0003723(InterPro)
HCH7g0655 655 SMART rrm1_1 315 387 IPR000504 GO:0003723(InterPro)
HCH7g0655 655 SMART rrm1_1 212 284 IPR000504 GO:0003723(InterPro)
HCH7g0655 655 FunFam Polyadenylate-binding protein 550 633 - -
HCH7g0655 655 Gene3D - 310 413 IPR012677 -
HCH7g0655 655 SUPERFAMILY RNA-binding domain, RBD 211 395 IPR035979 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0655 HCH-Chr7:6715627 HCH7g0657 HCH-Chr7:6785847 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0655 K13126 - csv:101223017 1097.42