Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0657 ATGGCTCAGGTTCCTCAACAACATCAAATATCGTTTTCGGGTTCTTCTGATCCGGCGGCGAATGGAGGAGGAGGAGGAGCCAATCAGGTTGTGACGACATCGTTATATGTCGGAGATCTTGATTTGAATGTCACTGATTCTCAGCTTTATGATGTTTTTAGTCAAGTGGGTCAAGTTGTCTCTGTTAGGGTTTGTAGAGATTTGGCTTCCCGGCGTTCTCTTGGTTATGGTTATGTTAATTTTAGCAATCCTTTGGATGCTACAAGGGCATTAGATGTGCTGAACTTCACTCCTTTAAATGGGAGTCCTATTAGAGTTATGTATTCACATCGTGACCCTAGTACTCGAAAAAGTGGGTCTGGAAATATTTTTATCAAGAACTTGGACAAGGCAATTGATCATAAAGCATTGCATGATACATTCTCTGCATTTGGGAACATTCTATCCTGCAAGGTTGCTACAGATTCAGCTGGACAGTCCAAAGGCTATGGTTTCGTGCAATTTGACAATGAGGAATCTGCCTTAAAAGCTATAGAAAAGTTGAATGGTATGCTGCTAAATGATAAGCAAGTCTATGTGGGACCCTTCATTCGTAAGCAGGAGAGAGAAAATGTCGGTGAAAAATCAAAATTTAACAATGTTTTCGTGAAGAATCTCTCAGAAACTACGTCTGAAGAAGATTTGAATGGTCTGTTTGCGGAGTTTGGGCCAATCACCAGTATTGTAGTGATGAGGGATGGGGATGGAAAATCCAAATGCTTTGGCTTCGTCAACTTTGAGAATGCAGATGATGCTGCCAGGTCTGTTGAGGCAGTTAATGGAAAGAAGGTTGATGGGAAGGAATGGTATGTAGGCAAAGCCCAGAAGAAATCGGAAAGGGAATCTGAGTTGAAAAATCGATTTGAGCAGACCTTAAAAGAAGTAGTTGATAAGTATCAAGGTGCAAACTTGTATGTCAAGAATTTAGATGATAGCATTGGTGACGATAAACTGAAGGAGTTCTTCGCCCCATTTGGTACCGTTACCTCATGCAAGGTTATGCGAGACCCTAATGGGATAAGTAGAGGATCTGGTTTTGTTGCATTCTCAACTGCTGACGAGGCTAATAGAGCTCTTGCTGAGATGAATGGGAAAATGGTCGTGAGCAAACCTCTTTATGTTGCCCTTGCACAGAGGAAGGAAGAGAGGAAAGCTAGGTTGCAGGCCCAATTTTCGCAAATGCAGCCAATTTCAATGGCATCTTCAGTTGCTCCTCGTGTGCCTATGTATCCTCCCGGTGGTCCAGGTCTTGGACAGCAGATATTCTATGGACAACCTCCACCTACTATAATTCCTTCCCAGCCTGGCTTTGGTTATCAGCAGCAGCTTTTGCCCGGTATGAGGCCTGGTGGGGCTCCCATGCCAAATTTCTTTATGCCAATGGTTCAGCAGGGCCAACAAGGGCAAAGATCTGGTGGGCGGCGCGCTGGGGGTATTCAGCAAAGCCAGCAGCCTGTTCCATTGATTCAGCCGCAGATGCTTCCAAGGGGACGTGTCTACCGTTACCCTCCTGGTCGTGGAATGCCTGATATGCCCATGCCTGGTGTTGCTGGAAGTATGTTCTCTGTTCCTTATGAGATGGGTGGAATGCCACCACGAGATGCAGTACATCCTCAGCCAATTCCTGTTGGTGCTTTGGCTTCTGCTCTTGCAAATGCCACTCCGGACCAGCAAAGAACGATGTTGGGGGAAAATCTCTATCCACTTGTAGAACAAGTAGAGTCAGATAACGCAGCCAAAGTTACGGGCATGCTGTTGGAAATGGACCAAACTGAAGTTTTGCACTTGCTGGAGTCACCGGAGGCTCTGAAATCAAAGGTGGCAGAAGCTATGGAGGTTTTGCGAAACGTTGCTGTTCATCAACAACAGACGGATCAATTGGCTTCACTCTCCTTGACTGACAACCTCGATTCCTGA 1956 45.4 MAQVPQQHQISFSGSSDPAANGGGGGANQVVTTSLYVGDLDLNVTDSQLYDVFSQVGQVVSVRVCRDLASRRSLGYGYVNFSNPLDATRALDVLNFTPLNGSPIRVMYSHRDPSTRKSGSGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDSAGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFIRKQERENVGEKSKFNNVFVKNLSETTSEEDLNGLFAEFGPITSIVVMRDGDGKSKCFGFVNFENADDAARSVEAVNGKKVDGKEWYVGKAQKKSERESELKNRFEQTLKEVVDKYQGANLYVKNLDDSIGDDKLKEFFAPFGTVTSCKVMRDPNGISRGSGFVAFSTADEANRALAEMNGKMVVSKPLYVALAQRKEERKARLQAQFSQMQPISMASSVAPRVPMYPPGGPGLGQQIFYGQPPPTIIPSQPGFGYQQQLLPGMRPGGAPMPNFFMPMVQQGQQGQRSGGRRAGGIQQSQQPVPLIQPQMLPRGRVYRYPPGRGMPDMPMPGVAGSMFSVPYEMGGMPPRDAVHPQPIPVGALASALANATPDQQRTMLGENLYPLVEQVESDNAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMEVLRNVAVHQQQTDQLASLSLTDNLDS 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6785847 6790001 - evm.model.ptg000013l.657 HCH7g0657 547942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0657 651 SMART rrm2_1 316 388 IPR003954 GO:0003676(InterPro)
HCH7g0657 651 SMART rrm2_1 34 107 IPR003954 GO:0003676(InterPro)
HCH7g0657 651 SMART rrm2_1 213 285 IPR003954 GO:0003676(InterPro)
HCH7g0657 651 SMART rrm2_1 122 194 IPR003954 GO:0003676(InterPro)
HCH7g0657 651 CDD RRM4_I_PABPs 314 392 - -
HCH7g0657 651 FunFam Polyadenylate-binding protein 551 634 - -
HCH7g0657 651 Pfam Poly-adenylate binding protein, unique domain 562 627 IPR002004 GO:0003723(InterPro)
HCH7g0657 651 SUPERFAMILY PABC (PABP) domain 496 638 IPR036053 GO:0003723(InterPro)
HCH7g0657 651 Pfam RNA recognition motif 317 385 IPR000504 GO:0003723(InterPro)
HCH7g0657 651 Pfam RNA recognition motif 214 282 IPR000504 GO:0003723(InterPro)
HCH7g0657 651 Pfam RNA recognition motif 123 191 IPR000504 GO:0003723(InterPro)
HCH7g0657 651 Pfam RNA recognition motif 35 105 IPR000504 GO:0003723(InterPro)
HCH7g0657 651 SUPERFAMILY RNA-binding domain, RBD 33 202 IPR035979 GO:0003676(InterPro)
HCH7g0657 651 MobiDBLite consensus disorder prediction 1 18 - -
HCH7g0657 651 FunFam Polyadenylate-binding protein 119 202 - -
HCH7g0657 651 CDD RRM2_I_PABPs 119 195 IPR045305 -
HCH7g0657 651 FunFam Polyadenylate-binding protein 298 403 - -
HCH7g0657 651 Gene3D - 313 414 IPR012677 -
HCH7g0657 651 Gene3D - 210 312 IPR012677 -
HCH7g0657 651 SMART poly_2 567 630 IPR002004 GO:0003723(InterPro)
HCH7g0657 651 FunFam Polyadenylate-binding protein 203 297 - -
HCH7g0657 651 Gene3D - 122 209 IPR012677 -
HCH7g0657 651 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 34 628 IPR006515 GO:0003723(InterPro)
HCH7g0657 651 PANTHER RNA BINDING PROTEIN 21 213 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
HCH7g0657 651 SMART rrm1_1 213 285 IPR000504 GO:0003723(InterPro)
HCH7g0657 651 SMART rrm1_1 122 194 IPR000504 GO:0003723(InterPro)
HCH7g0657 651 SMART rrm1_1 34 107 IPR000504 GO:0003723(InterPro)
HCH7g0657 651 SMART rrm1_1 316 388 IPR000504 GO:0003723(InterPro)
HCH7g0657 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723(InterPro)
HCH7g0657 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 289 IPR000504 GO:0003723(InterPro)
HCH7g0657 651 Gene3D - 550 633 - -
HCH7g0657 651 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 555 632 IPR002004 GO:0003723(InterPro)
HCH7g0657 651 Gene3D - 26 121 IPR012677 -
HCH7g0657 651 MobiDBLite consensus disorder prediction 1 25 - -
HCH7g0657 651 SUPERFAMILY RNA-binding domain, RBD 212 396 IPR035979 GO:0003676(InterPro)
HCH7g0657 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 193 IPR000504 GO:0003723(InterPro)
HCH7g0657 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 392 IPR000504 GO:0003723(InterPro)
HCH7g0657 651 FunFam Polyadenylate-binding protein 19 118 - -
HCH7g0657 651 CDD RRM3_I_PABPs 211 290 - -
HCH7g0657 651 CDD RRM1_I_PABPs 34 113 IPR034364 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0348 HCH-Chr11:3298268 HCH7g0657 HCH-Chr7:6785847 2.80E-121 dispersed
HCH13g0266 HCH-Chr13:1762899 HCH7g0657 HCH-Chr7:6785847 1.90E-191 dispersed
HCH7g0655 HCH-Chr7:6715627 HCH7g0657 HCH-Chr7:6785847 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0657 K13126 - csv:101223017 1088.94