Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0674 ATGGATTCGAATTCTACTGATTCATCAACATCACCTACTGTTAAGTCCTCGGTATCTCAACCTCCAGACGTACAACCTCAGGCTACTGTTACCTCTGGATTGGATAATTCTAGACGTGGTACACCGTCTAAGCTATCTACTGCTGGCATAACATCATGGGCCAAAAACTTGAAAATTTCTCAACCACAGCCGTCTGCACAAGATGGCTCAACTGAAAATGCTGGGAAATCTGCTTTTGCTCGTTTTACTAGTGGATTAGGTTTGAACTTATCTCCTAAAGCTGCTTCACCCACTGATTCCTCCGATGGAACTTCTAGAACTCAGCAACCCAGTTTTATGGGATCAATTACTAAAGGATTAGTTGACTCTTCAAAGAATGCTGTAAAGGCTGTACAGGTCAAAGCTCGTCATGTTGTCTCTCAAAATAAGCGAAGATACCAGGAAGGCGAATTTGATTTGGATATGACATATATAACTGAAAATATTATTGCTATGGGTTTCCCTGCTGGTGATATGAGCTCAGGGTTTTTTGGATACGTCGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATTAAGTTTTTTGAAACACAACACAAGGGAAAATACAAAGTGTATAATCTTTGTTCTGAGAGGCTATATGATGCATCCTTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGATCACAACTGTCCCCCAGCTCAACTGATCATATCATTCTGTCAAAGTGCTTACTCATGGCTGAAGGATGATATTGAAAATGTAGTGGTGGTGCATTGTAAAGCAGGAATGGCTAGAACAGGCTTGATGATTTCCAGTCTCCTTCTATATTTGAAGTTTTTTCCAACTGCTGAGGAATCCATGGATTACTACAACCAGAAAAGGTGTTTTGATGGTAAAGGCCTGGTTTTACCTAGTCAGATTAGATATGTCAAATATTTTGAGCGTATTTTAACATACTTCAATGGAGAAAATCCTCCTGGCCGTAGGTGTATGCTTAGAGGATTTCGTCTCCACAGGTGTCCATATTGGATCAGGCCTGCTATTACCGTATCTGATCAAAATGGTGTTCTATTCTCCACTAAAACACATCCAAGAACCAAGAGTCTCTCGACAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGAATAATGGTCTTTGCCTTGCCTGGGGAGCCTGGTCTAACTGAGTTGGTTGGGGACTTCAAGATCCATTTCCATGATCGCCAAGGAGATTTCTATTGTTGGCTAAACACGACCATGATTGAAAATCGAAAAATGCTCTACACTAGTGATCTTGATGGCTTTGATAAGAGGAAACTGCCTTCCCCCGGATTTCAGGTGGAGGTAGTTCTAGTCGATATACCTTCGAACATGGACAATGCTAGCAATAAATCGGATGAAAGCTCGGGCTCAACTGCAGTTGATGGGAGTGAAGTTCGTCCAAACCGAAATGGAAAATCAGGACCTCATGATAAAGATGATGTATTTTCTGACAGTGAATCAGCCAGCAAGACGATGTCTAATGCCAAAACAAGTTCAACTTCATCAGACGTTGCGAGTTTATCAAACGCAACGAAACAAGCTTCACTGTCAGACAGTGTAGCAAAACCCACTGCTCCTATTAGTGAGCCAAAAAGTGGTGATGTGGGCAGATCTGATTCTCTTCCGGAAGTTCCAAACTCAGAAAGTGAATTCAAGGCAATGGCTGCCGATGCTTCTGTTTTCACATTTGGCGATGAAGAAGACTACGAGAGTGAGTAA 1770 41.64 MDSNSTDSSTSPTVKSSVSQPPDVQPQATVTSGLDNSRRGTPSKLSTAGITSWAKNLKISQPQPSAQDGSTENAGKSAFARFTSGLGLNLSPKAASPTDSSDGTSRTQQPSFMGSITKGLVDSSKNAVKAVQVKARHVVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETQHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPAQLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESMDYYNQKRCFDGKGLVLPSQIRYVKYFERILTYFNGENPPGRRCMLRGFRLHRCPYWIRPAITVSDQNGVLFSTKTHPRTKSLSTEDFWFTAPKKGIMVFALPGEPGLTELVGDFKIHFHDRQGDFYCWLNTTMIENRKMLYTSDLDGFDKRKLPSPGFQVEVVLVDIPSNMDNASNKSDESSGSTAVDGSEVRPNRNGKSGPHDKDDVFSDSESASKTMSNAKTSSTSSDVASLSNATKQASLSDSVAKPTAPISEPKSGDVGRSDSLPEVPNSESEFKAMAADASVFTFGDEEDYESE 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7539355 7544807 + evm.model.ptg000013l.674 HCH7g0674 547959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0674 589 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 157 324 IPR029021 -
HCH7g0674 589 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 131 531 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
HCH7g0674 589 MobiDBLite consensus disorder prediction 487 502 - -
HCH7g0674 589 CDD PTP_PTEN 154 319 IPR045101 GO:0016791(InterPro)
HCH7g0674 589 ProSiteProfiles Phosphatase tensin-type domain profile. 144 323 IPR029023 -
HCH7g0674 589 SMART PTEN_C2_2 328 456 IPR014020 -
HCH7g0674 589 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 258 297 IPR000387 GO:0016311(InterPro)
HCH7g0674 589 ProSiteProfiles C2 tensin-type domain profile. 330 457 IPR014020 -
HCH7g0674 589 MobiDBLite consensus disorder prediction 461 481 - -
HCH7g0674 589 MobiDBLite consensus disorder prediction 1 49 - -
HCH7g0674 589 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 399 454 IPR035892 -
HCH7g0674 589 Gene3D Protein tyrosine phosphatase superfamily 129 326 IPR029021 -
HCH7g0674 589 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 129 326 - -
HCH7g0674 589 MobiDBLite consensus disorder prediction 503 539 - -
HCH7g0674 589 ProSitePatterns Tyrosine specific protein phosphatases active site. 260 270 IPR016130 GO:0016311(InterPro)
HCH7g0674 589 MobiDBLite consensus disorder prediction 89 112 - -
HCH7g0674 589 Pfam PTEN2, C2 domain 330 457 - -
HCH7g0674 589 MobiDBLite consensus disorder prediction 461 569 - -
HCH7g0674 589 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 225 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0272 HCH-Chr9:1682633 HCH7g0674 HCH-Chr7:7539355 9.70E-40 transposed
HCH14g0309 HCH-Chr14:31751854 HCH7g0674 HCH-Chr7:7539355 1.40E-196 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0674 K01110 - csv:101222304 976.081