Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0674 ATGGATTCGAATTCTACTGATTCATCAACATCACCTACTGTTAAGTCCTCGGTATCTCAACCTCCAGACGTACAACCTCAGGCTACTGTTACCTCTGGATTGGATAATTCTAGACGTGGTACACCGTCTAAGCTATCTACTGCTGGCATAACATCATGGGCCAAAAACTTGAAAATTTCTCAACCACAGCCGTCTGCACAAGATGGCTCAACTGAAAATGCTGGGAAATCTGCTTTTGCTCGTTTTACTAGTGGATTAGGTTTGAACTTATCTCCTAAAGCTGCTTCACCCACTGATTCCTCCGATGGAACTTCTAGAACTCAGCAACCCAGTTTTATGGGATCAATTACTAAAGGATTAGTTGACTCTTCAAAGAATGCTGTAAAGGCTGTACAGGTCAAAGCTCGTCATGTTGTCTCTCAAAATAAGCGAAGATACCAGGAAGGCGAATTTGATTTGGATATGACATATATAACTGAAAATATTATTGCTATGGGTTTCCCTGCTGGTGATATGAGCTCAGGGTTTTTTGGATACGTCGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATTAAGTTTTTTGAAACACAACACAAGGGAAAATACAAAGTGTATAATCTTTGTTCTGAGAGGCTATATGATGCATCCTTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGATCACAACTGTCCCCCAGCTCAACTGATCATATCATTCTGTCAAAGTGCTTACTCATGGCTGAAGGATGATATTGAAAATGTAGTGGTGGTGCATTGTAAAGCAGGAATGGCTAGAACAGGCTTGATGATTTCCAGTCTCCTTCTATATTTGAAGTTTTTTCCAACTGCTGAGGAATCCATGGATTACTACAACCAGAAAAGGTGTTTTGATGGTAAAGGCCTGGTTTTACCTAGTCAGATTAGATATGTCAAATATTTTGAGCGTATTTTAACATACTTCAATGGAGAAAATCCTCCTGGCCGTAGGTGTATGCTTAGAGGATTTCGTCTCCACAGGTGTCCATATTGGATCAGGCCTGCTATTACCGTATCTGATCAAAATGGTGTTCTATTCTCCACTAAAACACATCCAAGAACCAAGAGTCTCTCGACAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGAATAATGGTCTTTGCCTTGCCTGGGGAGCCTGGTCTAACTGAGTTGGTTGGGGACTTCAAGATCCATTTCCATGATCGCCAAGGAGATTTCTATTGTTGGCTAAACACGACCATGATTGAAAATCGAAAAATGCTCTACACTAGTGATCTTGATGGCTTTGATAAGAGGAAACTGCCTTCCCCCGGATTTCAGGTGGAGGTAGTTCTAGTCGATATACCTTCGAACATGGACAATGCTAGCAATAAATCGGATGAAAGCTCGGGCTCAACTGCAGTTGATGGGAGTGAAGTTCGTCCAAACCGAAATGGAAAATCAGGACCTCATGATAAAGATGATGTATTTTCTGACAGTGAATCAGCCAGCAAGACGATGTCTAATGCCAAAACAAGTTCAACTTCATCAGACGTTGCGAGTTTATCAAACGCAACGAAACAAGCTTCACTGTCAGACAGTGTAGCAAAACCCACTGCTCCTATTAGTGAGCCAAAAAGTGGTGATGTGGGCAGATCTGATTCTCTTCCGGAAGTTCCAAACTCAGAAAGTGAATTCAAGGCAATGGCTGCCGATGCTTCTGTTTTCACATTTGGCGATGAAGAAGACTACGAGAGTGAGTAA 1770 41.64 MDSNSTDSSTSPTVKSSVSQPPDVQPQATVTSGLDNSRRGTPSKLSTAGITSWAKNLKISQPQPSAQDGSTENAGKSAFARFTSGLGLNLSPKAASPTDSSDGTSRTQQPSFMGSITKGLVDSSKNAVKAVQVKARHVVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETQHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPAQLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESMDYYNQKRCFDGKGLVLPSQIRYVKYFERILTYFNGENPPGRRCMLRGFRLHRCPYWIRPAITVSDQNGVLFSTKTHPRTKSLSTEDFWFTAPKKGIMVFALPGEPGLTELVGDFKIHFHDRQGDFYCWLNTTMIENRKMLYTSDLDGFDKRKLPSPGFQVEVVLVDIPSNMDNASNKSDESSGSTAVDGSEVRPNRNGKSGPHDKDDVFSDSESASKTMSNAKTSSTSSDVASLSNATKQASLSDSVAKPTAPISEPKSGDVGRSDSLPEVPNSESEFKAMAADASVFTFGDEEDYESE 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7539355 7544807 + evm.model.ptg000013l.674 HCH7g0674 547959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0674 589 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 157 324 IPR029021 -
HCH7g0674 589 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 131 531 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
HCH7g0674 589 MobiDBLite consensus disorder prediction 487 502 - -
HCH7g0674 589 CDD PTP_PTEN 154 319 IPR045101 GO:0016791(InterPro)
HCH7g0674 589 ProSiteProfiles Phosphatase tensin-type domain profile. 144 323 IPR029023 -
HCH7g0674 589 SMART PTEN_C2_2 328 456 IPR014020 -
HCH7g0674 589 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 258 297 IPR000387 GO:0016311(InterPro)
HCH7g0674 589 ProSiteProfiles C2 tensin-type domain profile. 330 457 IPR014020 -
HCH7g0674 589 MobiDBLite consensus disorder prediction 461 481 - -
HCH7g0674 589 MobiDBLite consensus disorder prediction 1 49 - -
HCH7g0674 589 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 399 454 IPR035892 -
HCH7g0674 589 Gene3D Protein tyrosine phosphatase superfamily 129 326 IPR029021 -
HCH7g0674 589 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 129 326 - -
HCH7g0674 589 MobiDBLite consensus disorder prediction 503 539 - -
HCH7g0674 589 ProSitePatterns Tyrosine specific protein phosphatases active site. 260 270 IPR016130 GO:0016311(InterPro)
HCH7g0674 589 MobiDBLite consensus disorder prediction 89 112 - -
HCH7g0674 589 Pfam PTEN2, C2 domain 330 457 - -
HCH7g0674 589 MobiDBLite consensus disorder prediction 461 569 - -
HCH7g0674 589 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 225 278 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0674 K01110 - - csv:101222304 976.081
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0272 HCH-Chr9:1682633 HCH7g0674 HCH-Chr7:7539355 9.70E-40 transposed
HCH14g0309 HCH-Chr14:31751854 HCH7g0674 HCH-Chr7:7539355 1.40E-196 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH14g0309 . 35 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 8.6e-189 657.1
HCH7g0674 . 38 589 Protein tyrosine phosphatase (PTP) family AT3G50110 61.2 3.0e-186 648.7
HCH9g0272 . 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 2.1e-156 548.9
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT3G10550 68.3 0.0e+00 1161.4
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1109.4
HCH8g0927 . 1 1162 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 0.0e+00 1087.8
HCH8g1275 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 8.7e-116 415.6
HCH12g1470 . 4 325 Protein tyrosine phosphatase (PTP) family AT1G71860 67.6 1.5e-123 439.5
HCH8g1518 . 36 928 Protein tyrosine phosphatase (PTP) family AT5G23720 63.3 2.7e-308 1054.7
HCH6g1620 . 25 172 Protein tyrosine phosphatase (PTP) family AT3G06110 56.8 2.6e-44 175.3
HCH7g0076 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 75.7 3.9e-70 261.2
HCH1g0714 . 101 378 Protein tyrosine phosphatase (PTP) family AT3G52180 71.6 2.8e-115 411.8
HCH1g0316 . 7 281 Protein tyrosine phosphatase (PTP) family AT3G10940 70.8 3.7e-115 411.4
HCH9g0145 . 143 590 Protein tyrosine phosphatase (PTP) family AT3G01510 68.3 3.8e-191 664.5
HCH2g0875 . 64 225 Protein tyrosine phosphatase (PTP) family AT2G32960 66.3 1.7e-71 266.2
HCH7g0082 . 43 226 Protein tyrosine phosphatase (PTP) family AT2G32960 67.0 2.8e-69 258.8
HCH6g1038 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 54.4 1.1e-97 353.6
HCH10g0513 . 18 229 Protein tyrosine phosphatase (PTP) family AT2G35680 61.0 5.0e-79 291.6
HCH10g0513 . 28 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 9.1e-46 180.3
HCH2g0875 . 62 225 Protein tyrosine phosphatase (PTP) family AT4G03960 76.8 1.7e-74 275.8
HCH7g0082 . 38 226 Protein tyrosine phosphatase (PTP) family AT4G03960 63.0 3.8e-66 248.1
HCH8g0272 . 12 167 Protein tyrosine phosphatase (PTP) family AT4G03960 59.1 1.4e-52 203.0
HCH8g0272 . 1 193 Protein tyrosine phosphatase (PTP) family AT3G02800 70.1 8.9e-79 290.0
HCH2g0875 . 61 209 Protein tyrosine phosphatase (PTP) family AT3G02800 64.4 2.3e-55 212.2
HCH7g0082 . 32 223 Protein tyrosine phosphatase (PTP) family AT3G02800 51.0 9.2e-52 200.3
HCH1g0486 . 1 186 Protein tyrosine phosphatase (PTP) family AT3G55270 65.1 8.1e-64 242.3
HCH9g0272 . 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 2.1e-156 548.9
HCH7g0674 . 8 589 Protein tyrosine phosphatase (PTP) family AT3G19420 67.6 9.4e-225 776.5
HCH14g0309 . 33 604 Protein tyrosine phosphatase (PTP) family AT3G19420 62.0 5.2e-199 691.0
HCH14g0309 . 35 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 8.6e-189 657.1
HCH7g0674 . 38 589 Protein tyrosine phosphatase (PTP) family AT3G50110 61.2 3.0e-186 648.7
HCH8g0927 . 1 1162 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 0.0e+00 1087.8
HCH8g1275 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 8.7e-116 415.6
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT3G10550 68.3 0.0e+00 1161.4
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1109.4
HCH2g1250 . 60 240 Protein tyrosine phosphatase (PTP) family AT3G44620 64.9 5.1e-71 264.6
HCH6g1102 . 12 322 Protein tyrosine phosphatase (PTP) family AT2G35320 62.4 1.5e-114 409.5
HCH9g0750 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.8 1.1e-279 959.1
HCH9g0750 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.9 4.5e-257 884.0
HCH9g0750 . 78 673 Protein tyrosine phosphatase (PTP) family AT5G28210 55.2 1.3e-181 633.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83
       

Metabolome

Select Formula Compounds CID Class I Class II CAS cpd_ID kegg_map
C30H44O7 Cucurbitacin D 5281318 Terpenoids Triterpene 3877-86-9 C08796 ko00996,ko01110
C10H16O cis-Citral 643779 Terpenoids Monoterpenoids 5392-40-5 C09847 ko01110
C30H50O 9,19-Cyclolanost-24-en-3-ol (Cycloartenol) 0 Terpenoids Triterpene 469-38-5 C01902 ko00100,ko01100,ko01110
C20H30O2 Abietic acid 10569 Terpenoids Ditepenoids 514-10-3 C06087 ko00904,ko01100,ko01110
C16H24O9 7-Deoxyloganic acid 443322 Terpenoids Monoterpenoids 22487-36-1 C11636 ko00902,ko01110
C10H18O Eucalyptol; 1,8-Cineole 0 Terpenoids Monoterpenoids 470-82-6 C09844 ko00902,ko01110
C15H20O4 Abscisic acid 5375199 Terpenoids Sesquiterpenoids 21293-29-8 C06082 ko00906,ko01100,ko01110,ko04075
C20H30O2 Kaurenoic Acid* 0 Terpenoids Ditepenoids 6730-83-2 C11874 ko00904,ko01100,ko01110
C20H30O2 Isopimaric acid* 0 Terpenoids Ditepenoids 5835-26-7 C09118 ko00904,ko01110
C16H22O10 Geniposidic acid 443354 Terpenoids Monoterpenoids 27741-01-1 C11673 ko00902,ko01110
C20H30O Ferruginol 442027 Terpenoids Ditepenoids 514-62-5 C09092 ko00904,ko01110
C20H34O Abienol 6151409 Terpenoids Ditepenoids 17990-16-8 C20481 ko00904,ko01110