Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0676 ATGGCATTGCATCAAAATGAACATCAAACTCATCATCAACAGCAGCAGCAACAAAACCCTTTATTTCTTTTGGACTGCCTCTACTGTGAGGAAGAAAAATGGGAAGATGAACAAGAACAGCAAGAACAAAACTATGAACTTCAACTAGAAGAATCCATTTTGGATGATGATGATAATGGCAGAAAAGAATGCTTCTCCTTTCTTTTGGAAGCCATCAGTCTGCTTGATGATGATCAAGAGCTAGACTCCTTGTTTTCCAAAGAACAAGAGAATCATCAAACCTCAGATTTGATAGAAACCGATCGGATTCACTTGTTGGCGAGGACGGAGGCTGTGGAATGGATTCTCAAAGTTAATGCTCATTATGGATTTCAATCACTCACAGCTCTCTTAGCCATTAATTATCTTGATAGAGTCCTCTCTGGCCCTCATTTTCAAAGAGACAAACCATGGATGGTTCAGCTTTTAGCTGTAACTTGCATCTCTTTAGCTGCAAAAGTGGAGGAAATTCAAGTCCCTCTTCTTCTAGACCTCCAGGTTGAAGATTCAAAGTATTATTTTGAAGCCAAAACAATACAAAGAATGGAGCTTTTGGTGCTTACTGCTCTGCAATGGAAGATGCATCCTGTAACCCCAGTTTCATTCCTTGATCTCATCATAAGAAGATTTGGATTGAGAACTCAGATTCAGATGGAGTTTTTTTGGCGTTGTGACCGTGTTCTTCTCTCTTTAGCCTCAGATTCAAGATCCGTGAGTTATCTTCCTTCTGTATTAGCTATCTCAACAATGGCAACCGTTATAGAACAGATGGGAAACTGTAACTCCATAGACTTTCTAGATCGACTCCTTAAATCCCTCAACATAAACAAGGAAAGAGTAAATGAGTGTTGCAATCTGATATTGGAGCTCTCAAAATCCAATACAAAAGCAGATCACAAAAACCATGGGAAGAGGAAGAATGAAGAAAGATCAGAAGTTCCAGAGAGCCCTAATGGAGTGATCGATGCCAGTTTTAGCTCTGATAATTCCAACGATTCGTGGGCTGTGGTGGGGACTAAATTGTCAGAAGAAGAAGAAGAAGAAGATTACTATTATTCACCTCATTCCAAAAGAAGCAGAGGCAGAGATCAGCCCCCCATGATTCTTCCTTCACTTATAAACAGGGTTTTTGTGGACCTTGTGACCAACCCTCCATAG 1197 40.18 MALHQNEHQTHHQQQQQQNPLFLLDCLYCEEEKWEDEQEQQEQNYELQLEESILDDDDNGRKECFSFLLEAISLLDDDQELDSLFSKEQENHQTSDLIETDRIHLLARTEAVEWILKVNAHYGFQSLTALLAINYLDRVLSGPHFQRDKPWMVQLLAVTCISLAAKVEEIQVPLLLDLQVEDSKYYFEAKTIQRMELLVLTALQWKMHPVTPVSFLDLIIRRFGLRTQIQMEFFWRCDRVLLSLASDSRSVSYLPSVLAISTMATVIEQMGNCNSIDFLDRLLKSLNINKERVNECCNLILELSKSNTKADHKNHGKRKNEERSEVPESPNGVIDASFSSDNSNDSWAVVGTKLSEEEEEEDYYYSPHSKRSRGRDQPPMILPSLINRVFVDLVTNPP 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7566241 7567850 + evm.model.ptg000013l.676 HCH7g0676 547961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0676 398 CDD CYCLIN_AtCycD-like_rpt1 107 205 - -
HCH7g0676 398 Gene3D - 81 298 - -
HCH7g0676 398 Pfam Cyclin, C-terminal domain 210 317 IPR004367 -
HCH7g0676 398 CDD CYCLIN_AtCycD-like_rpt2 210 300 - -
HCH7g0676 398 FunFam D6-type cyclin 91 208 - -
HCH7g0676 398 SMART Cyclin_C_2 210 329 IPR004367 -
HCH7g0676 398 MobiDBLite consensus disorder prediction 310 328 - -
HCH7g0676 398 Gene3D - 94 208 - -
HCH7g0676 398 PANTHER CYCLINS 44 304 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
HCH7g0676 398 MobiDBLite consensus disorder prediction 310 380 - -
HCH7g0676 398 Coils Coil 24 51 - -
HCH7g0676 398 SUPERFAMILY Cyclin-like 77 208 IPR036915 -
HCH7g0676 398 MobiDBLite consensus disorder prediction 333 350 - -
HCH7g0676 398 Pfam Cyclin, N-terminal domain 83 207 IPR006671 -
HCH7g0676 398 ProSitePatterns Cyclins signature. 108 139 IPR048258 -
HCH7g0676 398 SMART cyclin_7 113 201 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0676 HCH-Chr7:7566241 HCH9g0688 HCH-Chr9:4591929 7.40E-21 dispersed
HCH11g0922 HCH-Chr11:40454716 HCH7g0676 HCH-Chr7:7566241 8.70E-33 wgd
HCH12g0596 HCH-Chr12:3496908 HCH7g0676 HCH-Chr7:7566241 4.60E-67 wgd
HCH14g0311 HCH-Chr14:31788478 HCH7g0676 HCH-Chr7:7566241 2.20E-66 wgd
HCH4g0620 HCH-Chr4:4058121 HCH7g0676 HCH-Chr7:7566241 6.20E-75 wgd
HCH4g1861 HCH-Chr4:48653593 HCH7g0676 HCH-Chr7:7566241 2.60E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0676 K14505 - csv:101222066 338.961