Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0708 ATGGATTCGCCGGAACATCACACGCCTCCTCTCCGATCATCCAAAAAGCGTGTTTCCGGAGAACAATCTCTGCAATTAGCCACGACTAATAAGCGAGCCGTTCTGAGCGAGATCACTAACTCGTTGATCTTAAATCCGAGTCAGAGATTGGTTCCTGATGATGAGGAGGAGAAGGAGGCTTCTGCGTCTTGTATTTATCGATACCTTCGATCTTTGGAGATGGAATTACACAAGAAGCTACTGCCCAATAATATCGAAAAGGTCGAAAATGGTGTTTCCGGTTCTAATTCCTCCCGTATACGAGGAATTCTAATGGACTGGTTAGTGGAAGTTGCTGAGGAATACAAGCTTGTATCAGACACCCTCTATCTCACTGTATCGTTTATTGACAGATTTCTGGCCTCTCATGCCGTTGATAGAAACAAGCTGCAGCTTCTTGGTGTTAGTTGCATGCTCATCGCCTCAAAATATGAAGAGATTAGCCCTCCACATGTTGAAGACTTTTGCTATATAACGGATAATACATATACTAAAGAGGAGGTATTGGATATGGAGAGAAAGGTACAAAGATTCTTGATCTGTGACATAGGTGCCCCCACGATAAAAAAATTTCTCAGAATATTCACAAAAGTTGCTTCAGAAAATTGGAAGGTTCCAGACTTGGAATTTGAGTTCTTGAGTTGTTATCTTGCGGAGCTAAGTTTGTTAGATTACCGCTGTGTGCAATTCTTACCATCAATCATCGCTGCATCAGCAATCTTTCTTTCTATATTCACTCTCCAACCGCAGAAACATCCCTGGAATTTAGCATTGCAATGCTACTCCGGTTACAGGCCATCTGAACTGATGGAATGCATTCTTGTCATTCACGATTTACAATTGAATAGAAAAGGAAGCTCTTTAAAAGCAACAAGAGTCAAGTACAAGCATCAAAAGTTCAAGTGTGTAGCCACCTTATATCCGCCCTTGGAAGTTCCTGCGCGTTATTTTGAGGATATCGATAAACAAGCATCAAAACGATTCTTAAAAGCTTAA 1035 41.26 MDSPEHHTPPLRSSKKRVSGEQSLQLATTNKRAVLSEITNSLILNPSQRLVPDDEEEKEASASCIYRYLRSLEMELHKKLLPNNIEKVENGVSGSNSSRIRGILMDWLVEVAEEYKLVSDTLYLTVSFIDRFLASHAVDRNKLQLLGVSCMLIASKYEEISPPHVEDFCYITDNTYTKEEVLDMERKVQRFLICDIGAPTIKKFLRIFTKVASENWKVPDLEFEFLSCYLAELSLLDYRCVQFLPSIIAASAIFLSIFTLQPQKHPWNLALQCYSGYRPSELMECILVIHDLQLNRKGSSLKATRVKYKHQKFKCVATLYPPLEVPARYFEDIDKQASKRFLKA 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8615998 8621864 - evm.model.ptg000013l.708 HCH7g0708 547993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0708 344 SMART cyclin_7 106 190 IPR013763 -
HCH7g0708 344 SMART cyclin_7 203 291 IPR013763 -
HCH7g0708 344 MobiDBLite consensus disorder prediction 1 23 - -
HCH7g0708 344 Pfam Cyclin, C-terminal domain 199 321 IPR004367 -
HCH7g0708 344 Gene3D - 65 318 - -
HCH7g0708 344 ProSitePatterns Cyclins signature. 101 132 IPR048258 -
HCH7g0708 344 FunFam Cyclin N-terminal domain containing 2 90 191 - -
HCH7g0708 344 SUPERFAMILY Cyclin-like 199 322 IPR036915 -
HCH7g0708 344 CDD CYCLIN_AtCycA-like_rpt2 199 313 - -
HCH7g0708 344 SMART Cyclin_C_2 199 322 IPR004367 -
HCH7g0708 344 PANTHER CYCLINS 46 309 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
HCH7g0708 344 SUPERFAMILY Cyclin-like 65 194 IPR036915 -
HCH7g0708 344 FunFam Cyclin A1 192 318 - -
HCH7g0708 344 Pfam Cyclin, N-terminal domain 65 195 IPR006671 -
HCH7g0708 344 Gene3D - 80 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1352 HCH-Chr4:9549372 HCH7g0708 HCH-Chr7:8615998 7.90E-70 dispersed
HCH7g0708 HCH-Chr7:8615998 HCH9g0977 HCH-Chr9:7299250 9.20E-36 dispersed
HCH12g0581 HCH-Chr12:3405954 HCH7g0708 HCH-Chr7:8615998 8.20E-83 wgd
HCH4g0610 HCH-Chr4:4008048 HCH7g0708 HCH-Chr7:8615998 4.20E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0708 K06627 - csv:101213896 456.832