Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0720 ATGATGATAAGATCTTTATATCGGCCATTAGAGCGTTGTATTGGTCGTTGGGGCGGTGATGGGCTTCTTTGGCAGTCAGAATTGAAGCAACATGCTTGTGGAGATTACTCAATTGCTGTTGTTCAAGCTAATTCTTGTCTTGAAGATCAAAGTCAAGTTTTTACTTCTCCTTCTGCAACTTTTGTTGGTGTTTATGATGGCCATGGTGGCCCTGAAGCTTCTCGTTTTGTTAATAAACATCTCTTCCCTTTTATGCACAAGTTCGCATCAGAACAAGGGGGGATATCTGAGGATGTTATAAAGAAGGCATTCAATGCTACTGAAGAGGAGTTTCTGCGTTTAGTGAAGCGGGCGTTGCCTGCAAAGCCGCAGATTGCTTCGGTTGGATCGTGTTGTCTCGTTGGAGCGATTTCGAATGAGAAATTATATGTTGCGAATCTTGGGGATTCGAGAGCTGTGCTTGGCCGGAGTGTTTCAGAGAGTAACAGAACCCCGGTTGTTGCAGAGCGATTGTCCACTGATCATAATGTTGGAGTAGATGAAGTTAGGAAAGAGGTTGTAGCACTTCATCCTGATGATGCTCATATTGTTGTGTATACCCGCGGCGTCTGGAGAATAAAGGGCATTATTCAGGTTTCAAGATCTATTGGTGATGTCTATCTGAAAAGGCCTGAATTTAACAGGGATCCAATATTCCAACAATTCGGAAATCCTGTTCCATTGAAGCGACCGGTAATGACAGCAGAACCTTCAATCCTGACACGAGAGCTCAAACCGCAAGACTTATTCCTGATCTTTGCATCAGATGGCCTCTGGGAACAATTGACTGATGAGGCTGCTGTAGATATAGTTTTCAAGAACCCAAGAGCTGGAATTGCAAAGAGATTGGTGAGAGCTGCCCTCAACGAGGCTGCGAAGAAGAGGGAGATGAGATACAGCGACTTAAAGAGAATTGAAAAGGGAATACGTCGTCATTTCCACGACGATATCACTGTTATCGTGGTTTATCTCGATCACAATAGAAGCCCGGCCACTAGCCGAGCAAAGAACAATATTGCAGGCTGCACCAGTGCACCAGTTGACATCTTCTCTCACAATTCAGACTATGAAGAAGAGGATAGACCTCTCACAATGTTCTGA 1140 44.3 MMIRSLYRPLERCIGRWGGDGLLWQSELKQHACGDYSIAVVQANSCLEDQSQVFTSPSATFVGVYDGHGGPEASRFVNKHLFPFMHKFASEQGGISEDVIKKAFNATEEEFLRLVKRALPAKPQIASVGSCCLVGAISNEKLYVANLGDSRAVLGRSVSESNRTPVVAERLSTDHNVGVDEVRKEVVALHPDDAHIVVYTRGVWRIKGIIQVSRSIGDVYLKRPEFNRDPIFQQFGNPVPLKRPVMTAEPSILTRELKPQDLFLIFASDGLWEQLTDEAAVDIVFKNPRAGIAKRLVRAALNEAAKKREMRYSDLKRIEKGIRRHFHDDITVIVVYLDHNRSPATSRAKNNIAGCTSAPVDIFSHNSDYEEEDRPLTMF 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8945553 8947989 - evm.model.ptg000013l.720 HCH7g0720 548005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0720 379 Pfam Protein phosphatase 2C 54 306 IPR001932 -
HCH7g0720 379 FunFam Probable protein phosphatase 2C 42 26 345 - -
HCH7g0720 379 ProSitePatterns PPM-type phosphatase domain signature. 61 69 IPR000222 GO:0043169(InterPro)
HCH7g0720 379 PANTHER PROTEIN PHOSPHATASE 27 336 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH7g0720 379 SUPERFAMILY PP2C-like 43 338 IPR036457 -
HCH7g0720 379 Gene3D - 23 346 IPR036457 -
HCH7g0720 379 ProSiteProfiles PPM-type phosphatase domain profile. 35 337 IPR001932 -
HCH7g0720 379 CDD PP2Cc 42 337 IPR001932 -
HCH7g0720 379 SMART PP2C_4 25 335 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0562 HCH-Chr11:8501636 HCH7g0720 HCH-Chr7:8945553 5.80E-114 dispersed
HCH7g0447 HCH-Chr7:3329129 HCH7g0720 HCH-Chr7:8945553 7.50E-14 dispersed
HCH7g0452 HCH-Chr7:3352611 HCH7g0720 HCH-Chr7:8945553 5.50E-109 dispersed
HCH7g0720 HCH-Chr7:8945553 HCH9g1262 HCH-Chr9:35875538 6.80E-16 dispersed
HCH7g0720 HCH-Chr7:8945553 HCH2g0571 HCH-Chr2:49532998 7.30E-111 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0720 - - - 0.0