Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH7g0728 | ATGGCTTTAGAGGCTTTGAATTCTCCCACTGCTATCCCTCCTCCATTTTCCCATGAAGATCGTCATCATCCTGATCATGATATCAATACCTTAGAGCCATGGATGAAGCTAAAGAAGAAGAGATCAAAACGTCCACGTAATTTCGATAACACCCCACCAACCGAGGAAGAATACTTAGCTCTCTGCCTCATCATGCTCGCCCGCGGCGGCGCTCCTACGCCGCTCCCTCCGCCGCCTACTTTGAAATCGGCTTATACTTGCTCTGTTTGTAATAAGTCTTTTCCTTCTTATCAAGCTCTTGGTGGTCATAAAGCTAGTCACCGGAAATCTATCTCCGATGACCCGTCTACCTCTCCCGCCTCTGCGCCTGCCACCTCATCGGTTACTTCTTCTGCTGCTGGGAGTGGAAGGACCCATCAGTGTTCTATTTGTTTCAAGAGCTTTCCGACCGGTCAGGCTCTCGGCGGTCACAAACGCCGCCACTACGACGGCGGTAATAGTAACAGCGCCGCCAATGTCACCGTGTCGGAAGGAAACGGATCGAGTCTGAGTCAAACACACCGCGATTTCGACTTGAACGTGCCGGCCTTGCCGGAGTTGTGGACCGGGTTAGGCGGTGACCGACAGAGGAAAAGTCAAAGTCAAAGTCAATATTTTGGAGAGCAAGAAGTGGAAAGCCCTCACCCATCGAAAAAGCCACGGTTTTTGCTTCCGATGAACTGA | 723 | 51.04 | MALEALNSPTAIPPPFSHEDRHHPDHDINTLEPWMKLKKKRSKRPRNFDNTPPTEEEYLALCLIMLARGGAPTPLPPPPTLKSAYTCSVCNKSFPSYQALGGHKASHRKSISDDPSTSPASAPATSSVTSSAAGSGRTHQCSICFKSFPTGQALGGHKRRHYDGGNSNSAANVTVSEGNGSSLSQTHRDFDLNVPALPELWTGLGGDRQRKSQSQSQYFGEQEVESPHPSKKPRFLLPMN | 240 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 9128355 | 9129077 | - | evm.model.ptg000013l.728 | HCH7g0728 | 548013 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH7g0728 | 240 | MobiDBLite | consensus disorder prediction | 201 | 240 | - | - | |
| HCH7g0728 | 240 | MobiDBLite | consensus disorder prediction | 112 | 136 | - | - | |
| HCH7g0728 | 240 | SUPERFAMILY | beta-beta-alpha zinc fingers | 85 | 161 | IPR036236 | - | |
| HCH7g0728 | 240 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED | 18 | 201 | IPR044653 | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER) | |
| HCH7g0728 | 240 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 85 | 107 | IPR013087 | - | |
| HCH7g0728 | 240 | MobiDBLite | consensus disorder prediction | 165 | 187 | - | - | |
| HCH7g0728 | 240 | MobiDBLite | consensus disorder prediction | 207 | 223 | - | - | |
| HCH7g0728 | 240 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 141 | 161 | IPR013087 | - | |
| HCH7g0728 | 240 | MobiDBLite | consensus disorder prediction | 105 | 136 | - | - | |
| HCH7g0728 | 240 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 139 | 161 | IPR013087 | - | |
| HCH7g0728 | 240 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 87 | 107 | IPR013087 | - | |
| HCH7g0728 | 240 | Pfam | C2H2-type zinc finger | 139 | 163 | IPR013087 | - | |
| HCH7g0728 | 240 | Pfam | C2H2-type zinc finger | 84 | 110 | IPR013087 | - | |
| HCH7g0728 | 240 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| HCH7g0728 | 240 | Gene3D | Classic Zinc Finger | 82 | 161 | - | - | |
| HCH7g0728 | 240 | SMART | c2h2final6 | 85 | 107 | IPR013087 | - | |
| HCH7g0728 | 240 | SMART | c2h2final6 | 139 | 161 | IPR013087 | - | |
| HCH7g0728 | 240 | MobiDBLite | consensus disorder prediction | 155 | 187 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH3g1328 | HCH-Chr3:50883108 | HCH7g0728 | HCH-Chr7:9128355 | 3.30E-07 | dispersed | |
| HCH7g0728 | HCH-Chr7:9128355 | HCH8g1261 | HCH-Chr8:47860861 | 1.40E-11 | dispersed | |
| HCH9g0642 | HCH-Chr9:4268995 | HCH7g0728 | HCH-Chr7:9128355 | 3.80E-06 | dispersed | |
| HCH12g0563 | HCH-Chr12:3317544 | HCH7g0728 | HCH-Chr7:9128355 | 2.60E-53 | wgd | |
| HCH4g0592 | HCH-Chr4:3915887 | HCH7g0728 | HCH-Chr7:9128355 | 2.90E-24 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 33875 | PF13912 | zf-C2H2_6 | 3.20E-10 | CL0361 | HCH | TF |
Pathway information