Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0731 ATGGAGCTCACAGGAGAAACTTCAGAAGGTGAATGGAGCTCTCTCAGTGGAATGTATACAGCTGAGGAAGCAGCTTTCATGGCTCAGTTGCTTAACAACACCACCTTCTCTGCTCCCAATCACCTCACTTTTGGAGCTTCTAATTCAAATTTAGGCCTCCCATCTGCTGCTTATTGCTCAGGCCCTGAAAATACAATGGCCCATCATCATATGGCTGCTTTTGATCAAGGTTCATATGGATTTTCTCAAGAAAGTAGTGATTTCAGTGGAGGGAGCTGCAGTCAAATTCCCAATGAAAACTATTACTTGAGTGATTCTCTTCCTGTTTCCATGAACTTTTGTCTTGGAAATCTTGAATGCAATGAGTGCTATGGCTTTGAAGATGATGATGACTCTTTGAAACCAGAGATGAGTGAAGGCAATGTGCAGCAGCCTAATGTTGAAGTTGAACCTGCTTTGACAAAACCAGAACCTGCTGCCATTGAAGATGAGAGTAATCAGATTGAGAGTTTTAAGAAAAGATCAAGAAGTTCTGGTGAAGTACAGAAGAGGAGAGATGTGAGGTTAAAGAAAACTCAGAAGCAAACCTCAAAAAGCAATAATGAAGAAGATTGCAATGCTGGGAACTGCAGACAAAGCACAAGTAGTTATTGCTCAGAAGATGAATCTAATGCCTCTCAGGAGCTAAATGGAGAAAATTCAGAATCAAGTCCTAAAGGGAAAGCCAAAACCAGAGCCAGCAGGGGATCAGCTACAGATCCACAGAGTCTCTATGCAAGGAAAAGAAGAGAGAGAATCAATGAGAGATTGAGAATCTTACAGACCCTGGTCCCAAATGGAACAAAAGTTGATATTAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTGCAACTCCAAATCAAGCTATTAAGCTCCGACGATTTATGGATGTATGCTCCAATCGCCTACAACGGAATGGACATTGGACTTAATCTAAATCTGAACACACCAAAAGAATCATGA 1011 41.25 MELTGETSEGEWSSLSGMYTAEEAAFMAQLLNNTTFSAPNHLTFGASNSNLGLPSAAYCSGPENTMAHHHMAAFDQGSYGFSQESSDFSGGSCSQIPNENYYLSDSLPVSMNFCLGNLECNECYGFEDDDDSLKPEMSEGNVQQPNVEVEPALTKPEPAAIEDESNQIESFKKRSRSSGEVQKRRDVRLKKTQKQTSKSNNEEDCNAGNCRQSTSSYCSEDESNASQELNGENSESSPKGKAKTRASRGSATDPQSLYARKRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLNLNTPKES 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9295925 9297625 + evm.model.ptg000013l.731 HCH7g0731 548016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0731 336 SMART finulus 256 305 IPR011598 GO:0046983(InterPro)
HCH7g0731 336 CDD bHLH_AtIND_like 251 313 - -
HCH7g0731 336 MobiDBLite consensus disorder prediction 166 198 - -
HCH7g0731 336 MobiDBLite consensus disorder prediction 131 262 - -
HCH7g0731 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 250 315 IPR036638 GO:0046983(InterPro)
HCH7g0731 336 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 27 319 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
HCH7g0731 336 FunFam Basic helix-loop-helix transcription factor 251 308 - -
HCH7g0731 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 250 299 IPR011598 GO:0046983(InterPro)
HCH7g0731 336 Gene3D - 252 308 IPR036638 GO:0046983(InterPro)
HCH7g0731 336 MobiDBLite consensus disorder prediction 199 237 - -
HCH7g0731 336 Pfam Helix-loop-helix DNA-binding domain 260 300 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0731 HCH-Chr7:9295925 HCH8g0922 HCH-Chr8:45517757 1.50E-14 dispersed
HCH12g0562 HCH-Chr12:3308380 HCH7g0731 HCH-Chr7:9295925 1.60E-41 wgd
HCH4g0590 HCH-Chr4:3896005 HCH7g0731 HCH-Chr7:9295925 6.70E-45 wgd
HCH4g1831 HCH-Chr4:47210590 HCH7g0731 HCH-Chr7:9295925 2.30E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33876 PF00010 HLH 6.00E-09 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0731 - - - 0.0