Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH7g0773 | ATGGGGACATCATCTATGATAGTTCTATCTGAATTGGGAATGGAGGATACAGGCTTTGTCAATCAGTGGCACAAGAGCTCTATGGATGAGTTTGACATACTCCCACTTGCAGCTGCTTTTGGAGAAAATTTGCAGCATTCATATTCTCAGGCAAACTTTGACCAAAAAGCTGCTCTAAACAATTCTCACAGTGCCATATTTGGCTATGTGAAACAGCTCAAAACTGATGGGTGGGATTCATACCAAAATGATCATCTCTCAAACTCACAAGCTGCTGCTTATCCGGCCGGATCCGTTTTCGGTTCCAATTACACCAATCAAATGGGCTTCATGAAGCCAAAAGAGGAGGCTGTGTGTCCTCAGAGTATCAGCAACCTCCCTTCTGATATGTTGATTTCTCAGGGTTCATTTTGCAACCAAAGTCATGTAGCCAAGTCGTATTGTGGGACGAAGAGAACCACTACGAACAATAGATTTTCTCAGGCTCAAGATCACATTCTTGCTGAAAGGAAACGGCGAGAGAAGCTCAGCCAGCGGTTTATAGCTTTGTCAGCTATAGTTCCTGGCCTAAAAAAGATGGACAAGGCTTCTGTTCTTGGAGATGCTATCAAGTACCTGAAACAACTGCAAGAGAAAGTGAAGATACTAGAGGAACAAACCCGAAGGAAAGACATCGAATCCGTGGTATTTGTCAAGAAATCCCAAGTCTTCGCTGAAGGAAACAACTCTTCAAATGAGGATTTCTCTGGAAGCCCGTCCAATGAGCCGCTTCCGGAGATCGAAGCAAGAATTTGCGACAAAAATGTCCTCATAAGAATACACTGTGAGAAGAAGAAAGATATCATAGAGAAGACAGTTGCTGAAATTGAAAAGTTGCACCTAACAATAGTCAACAGCAGTATTATGACATTTGGGAGTCTTGCTCTTGACATAACCATTATTGCTCAGATGGATAAAGAATTGTGTTTGACAGTAAAGGATTTGGTGAAGAAGCTGCAATCAACTCTCAGCTTGTTCCAATGA | 1023 | 42.23 | MGTSSMIVLSELGMEDTGFVNQWHKSSMDEFDILPLAAAFGENLQHSYSQANFDQKAALNNSHSAIFGYVKQLKTDGWDSYQNDHLSNSQAAAYPAGSVFGSNYTNQMGFMKPKEEAVCPQSISNLPSDMLISQGSFCNQSHVAKSYCGTKRTTTNNRFSQAQDHILAERKRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQTRRKDIESVVFVKKSQVFAEGNNSSNEDFSGSPSNEPLPEIEARICDKNVLIRIHCEKKKDIIEKTVAEIEKLHLTIVNSSIMTFGSLALDITIIAQMDKELCLTVKDLVKKLQSTLSLFQ | 340 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 12388252 | 12389957 | - | evm.model.ptg000013l.773 | HCH7g0773 | 548058 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH7g0773 | 340 | Gene3D | - | 156 | 231 | IPR036638 | GO:0046983(InterPro) | |
| HCH7g0773 | 340 | Pfam | Helix-loop-helix DNA-binding domain | 164 | 210 | IPR011598 | GO:0046983(InterPro) | |
| HCH7g0773 | 340 | CDD | bHLH_AtNAI1_like | 160 | 234 | - | - | |
| HCH7g0773 | 340 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 160 | 209 | IPR011598 | GO:0046983(InterPro) | |
| HCH7g0773 | 340 | Coils | Coil | 199 | 226 | - | - | |
| HCH7g0773 | 340 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 164 | 222 | IPR036638 | GO:0046983(InterPro) | |
| HCH7g0773 | 340 | SMART | finulus | 166 | 215 | IPR011598 | GO:0046983(InterPro) | |
| HCH7g0773 | 340 | PANTHER | BHLH TRANSCRIPTION FACTOR | 10 | 336 | IPR052610 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH11g0742 | HCH-Chr11:36165301 | HCH7g0773 | HCH-Chr7:12388252 | 3.40E-50 | dispersed | |
| HCH14g0412 | HCH-Chr14:33144599 | HCH7g0773 | HCH-Chr7:12388252 | 4.00E-47 | dispersed | |
| HCH14g0413 | HCH-Chr14:33155850 | HCH7g0773 | HCH-Chr7:12388252 | 1.60E-42 | dispersed | |
| HCH7g0773 | HCH-Chr7:12388252 | HCH7g1715 | HCH-Chr7:48968235 | 1.30E-13 | dispersed | |
| HCH7g0773 | HCH-Chr7:12388252 | HCH14g0411 | HCH-Chr14:33136923 | 5.30E-52 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 33879 | PF00010 | HLH | 4.20E-10 | No_clan | HCH | TF |
Pathway information