Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0813 ATGCTGCAGCTTTCTCTTCGACGAGTGAGGAAATTGAGTGTTTTGAAGCCTCAGATCTTTGCTTTTGGAAATCTTCGTTTCTCTACCGTTGCTGAACCTTCTTCCAATTCCAATCCTACGAGGGTTCCAAATCTCATTGGTGGAACTTTTGTCGAGTCTCAATCATCAGCTTTCATAGATGTCATAAATCCGGCAACACAAGAAGTTGTTTCTCAAGTTCCGTTGACTACAAATGAAGAATTTAAAGCTGCAGTATCTGCAGCAAAACAGGCTTTTCCTGCATGGCGAAATACTCCGGTTACAACCCGTCAACGAATTATGTTCAAGCTTCAAGAACTCATTAGGCGAGATATTGATAAACTTGCTCTAAATATTACCACAGAACAAGGAAAAACGTTAAAGGATGCACAAGGCGATGTATTTCGCGGGCTAGAGGTTGTGGAACATGCATGCGGAATGGCATCTCTTCAGATGGGGGAGTATGTATGTAATGTGTCCAATGGGATAGATACCTACAGCATTAGAGAGCCTCTTGGTGTTTGTGCTGGGATTTGTCCGTTCAATTTTCCAGCCATGATCCCCTTATGGATGTTCCCAGTTGCTGTTACATGCGGTAATACCTTTGTTTTAAAGCCTTCAGAAAAAGACCCAGGGGCTTCTATAATGCTTGCAGAGTTAGCAATGGAGGCTGGATTACCTAATGGTGTCCTAAATGTGGTTCATGGTACCAATGATGTTGTTAATGCTATTTGTGATGATGAAGATGTTAAAGCAATATCATTTGTTGGTTCAAATGTTGCGGGCATGCATATATATTCGAGGGCATCAGCCAAAGGAAAGCGTGTTCAGTCCAACATGGGTGCAAAAAACCATGCAATTGTCTTGCCTGATGCAAGCATAGATTCTACTCTGAATGCTTTAGTCGCTGCTGGCTTTGGTGCTGCTGGACAAAGGTGCATGGCACTCAGTACAGTTGTCTTCGTTGGAGACTCCAAGTTGTGGGAGAATAAACTCATAGAACGTGTCAACTCTCTGAAGGTAAATTCTGGAACAGAACCTGATGCAGATCTTGGTCCAGTCATTAGCAAGCAGGCAAAGGAAAGGATTTGCAGCTTAGTTCAATCTGGGATTGAAAGTGGAGCCAGGCTACTGCTAGACGGGAGAAATATAGTGGTTCCTGGATATGAGCATGGAAATTTTATTGGCCCTACTATCTTATCAGATATCACAGCTGACATGGAGTGCTATAAGGAAGAAATATTTGGCCCAGTATTGCTTTGCATGCAGGCTGACAATTTAGAGGAAGCCATTAACATTGTTAACAGAAATAGGTATGGCAATGGAGCATCTATATTCACCACATCCGGCATAGCAGCGAGGAAGTTTCAGACAGAAATTGAGGCTGGACAGGTTGGGATCAATGTTCCAATTCCAGTTCCCTTGCCGTTCTTTTCGTTCACCGGCTCCAAGGCATCTTTTGCTGGCGATCTCAATTTCTATGGCAAGGCTGGGGTTAATTTTTTCACTCAAATCAAAACGGTGACACAACAATGGAAAGATTTACCAGGTGGAACTGGAGTTAATCTCGCAATGCCAACCTCCATTAAGTCATAA 1614 42.94 MLQLSLRRVRKLSVLKPQIFAFGNLRFSTVAEPSSNSNPTRVPNLIGGTFVESQSSAFIDVINPATQEVVSQVPLTTNEEFKAAVSAAKQAFPAWRNTPVTTRQRIMFKLQELIRRDIDKLALNITTEQGKTLKDAQGDVFRGLEVVEHACGMASLQMGEYVCNVSNGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFVLKPSEKDPGASIMLAELAMEAGLPNGVLNVVHGTNDVVNAICDDEDVKAISFVGSNVAGMHIYSRASAKGKRVQSNMGAKNHAIVLPDASIDSTLNALVAAGFGAAGQRCMALSTVVFVGDSKLWENKLIERVNSLKVNSGTEPDADLGPVISKQAKERICSLVQSGIESGARLLLDGRNIVVPGYEHGNFIGPTILSDITADMECYKEEIFGPVLLCMQADNLEEAINIVNRNRYGNGASIFTTSGIAARKFQTEIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVNFFTQIKTVTQQWKDLPGGTGVNLAMPTSIKS 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15804548 15819622 + evm.model.ptg000013l.813 HCH7g0813 548098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0813 537 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 44 518 IPR010061 GO:0004491(InterPro)
HCH7g0813 537 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 287 487 - -
HCH7g0813 537 CDD ALDH_F6_MMSDH 42 518 IPR010061 GO:0004491(InterPro)
HCH7g0813 537 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 9 534 IPR010061 GO:0004491(InterPro)|GO:0004491(PANTHER)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
HCH7g0813 537 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 46 293 - -
HCH7g0813 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 287 487 IPR016163 GO:0016620(InterPro)
HCH7g0813 537 Pfam Aldehyde dehydrogenase family 50 514 IPR015590 GO:0016491(InterPro)
HCH7g0813 537 SUPERFAMILY ALDH-like 36 520 IPR016161 GO:0016491(InterPro)
HCH7g0813 537 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 312 323 IPR016160 GO:0016491(InterPro)
HCH7g0813 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 495 IPR016162 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0436 HCH-Chr14:33397735 HCH7g0813 HCH-Chr7:15804548 1.20E-191 dispersed
HCH7g0813 HCH-Chr7:15804548 HCH4g0009 HCH-Chr4:88079 4.00E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0813 K00140 - csv:101204924 957.207