Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0821 ATGCTATTAAAAATGTCAGAATCCAATTTCCAAGATTCAATATATTGTTCTGGAGTAATGAGCAACAGTGGCAGGGATGTGAACAACATTCAGAATCAAGTGGGCGACGAAGAAGATGATGTTACCGGTGGCGAAGAGTCCATAGACAATCCTCAGCTGCGATTTGAAGACGGTGGCGTGATAAGCGGCCCGGTCTCGGTGATGAACCGTGTTGAGGATATTGCTCCGATTACTGGTTCTTATGTTCCCGGCGCTGATTATAATACAATGACTGGAAATGGTGGTGCTGATCAGCTTACTTTGTCATTCCGAGGTGACGTTTACGCTTTTGACGCAGTCTCGCCTGATAAGGTGCAAGCGGTGCTATTGCTTTTAGGTGGATATGAAATTCCTTCTGGCATTCCTACTGTTGGAAGTGTACCCATCAACCAACAGGGTATGGATGGCTTTCCTGTCAGGTCAGCACAACCCCAGAGAGCTGCTTCATTAAGTAGGTTCAGAGAGAAGAGAAAAGAAAGGTGTTTTGACAAGAAAATCCGTTACAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGAAAGAAGGGTCAGTTTATATCCTCAAAAGGTATTTCAGATGAAGTGGGCTCATCTTCAGTATTGGCTCAGACACTGGATTCTGGACAAGATGATAGCATGTTAGAAACTTTATGTACGCACTGTGGAATCAGTTCAAAGTCCACTCCAATGATGCGTCGCGGGCCAGCTGGCCCAAGGACTCTGTGCAATGCATGTGGGTTGAAGTGGGCGAATAAGGGAATGTTGAGGGATCTTTCCAAGGTTCCAAACATGGGTAATCAGGAACCTTCCATGAAGCAGAGTGAACAGAGTGATGGTGAAGCTAATGAATCTGACGCTGCAATTAATGTGGATATTGTCGCATCTAATGGTGATAACTAG 939 45.05 MLLKMSESNFQDSIYCSGVMSNSGRDVNNIQNQVGDEEDDVTGGEESIDNPQLRFEDGGVISGPVSVMNRVEDIAPITGSYVPGADYNTMTGNGGADQLTLSFRGDVYAFDAVSPDKVQAVLLLLGGYEIPSGIPTVGSVPINQQGMDGFPVRSAQPQRAASLSRFREKRKERCFDKKIRYNVRKEVALRMQRKKGQFISSKGISDEVGSSSVLAQTLDSGQDDSMLETLCTHCGISSKSTPMMRRGPAGPRTLCNACGLKWANKGMLRDLSKVPNMGNQEPSMKQSEQSDGEANESDAAINVDIVASNGDN 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16555480 16559136 - evm.model.ptg000013l.821 HCH7g0821 548106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0821 312 ProSiteProfiles Tify domain profile. 92 127 IPR010399 -
HCH7g0821 312 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g0821 312 PANTHER GATA TRANSCRIPTION FACTOR 28 46 305 IPR045280 GO:0006355(InterPro)
HCH7g0821 312 ProSiteProfiles CCT domain profile. 159 201 IPR010402 GO:0005515(InterPro)
HCH7g0821 312 ProSiteProfiles GATA-type zinc finger domain profile. 231 273 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g0821 312 SMART tify_2 92 127 IPR010399 -
HCH7g0821 312 CDD ZnF_GATA 231 273 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g0821 312 Gene3D - 227 275 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
HCH7g0821 312 Pfam CCT motif 159 201 IPR010402 GO:0005515(InterPro)
HCH7g0821 312 SMART GATA_3 225 279 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g0821 312 MobiDBLite consensus disorder prediction 276 296 - -
HCH7g0821 312 Pfam tify domain 96 126 IPR010399 -
HCH7g0821 312 Pfam GATA zinc finger 231 266 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g0821 312 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 229 279 - -
HCH7g0821 312 MobiDBLite consensus disorder prediction 272 312 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0267 HCH-Chr4:1704653 HCH7g0821 HCH-Chr7:16555480 2.40E-61 dispersed
HCH4g1575 HCH-Chr4:12371255 HCH7g0821 HCH-Chr7:16555480 7.50E-58 dispersed
HCH7g0821 HCH-Chr7:16555480 HCH9g0616 HCH-Chr9:4110505 5.30E-06 dispersed
HCH7g0821 HCH-Chr7:16555480 HCH8g1283 HCH-Chr8:47985896 6.20E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33880 PF06203 CCT 7.30E-16 CL0281 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0821 - - - 0.0