Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0821 ATGCTATTAAAAATGTCAGAATCCAATTTCCAAGATTCAATATATTGTTCTGGAGTAATGAGCAACAGTGGCAGGGATGTGAACAACATTCAGAATCAAGTGGGCGACGAAGAAGATGATGTTACCGGTGGCGAAGAGTCCATAGACAATCCTCAGCTGCGATTTGAAGACGGTGGCGTGATAAGCGGCCCGGTCTCGGTGATGAACCGTGTTGAGGATATTGCTCCGATTACTGGTTCTTATGTTCCCGGCGCTGATTATAATACAATGACTGGAAATGGTGGTGCTGATCAGCTTACTTTGTCATTCCGAGGTGACGTTTACGCTTTTGACGCAGTCTCGCCTGATAAGGTGCAAGCGGTGCTATTGCTTTTAGGTGGATATGAAATTCCTTCTGGCATTCCTACTGTTGGAAGTGTACCCATCAACCAACAGGGTATGGATGGCTTTCCTGTCAGGTCAGCACAACCCCAGAGAGCTGCTTCATTAAGTAGGTTCAGAGAGAAGAGAAAAGAAAGGTGTTTTGACAAGAAAATCCGTTACAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGAAAGAAGGGTCAGTTTATATCCTCAAAAGGTATTTCAGATGAAGTGGGCTCATCTTCAGTATTGGCTCAGACACTGGATTCTGGACAAGATGATAGCATGTTAGAAACTTTATGTACGCACTGTGGAATCAGTTCAAAGTCCACTCCAATGATGCGTCGCGGGCCAGCTGGCCCAAGGACTCTGTGCAATGCATGTGGGTTGAAGTGGGCGAATAAGGGAATGTTGAGGGATCTTTCCAAGGTTCCAAACATGGGTAATCAGGAACCTTCCATGAAGCAGAGTGAACAGAGTGATGGTGAAGCTAATGAATCTGACGCTGCAATTAATGTGGATATTGTCGCATCTAATGGTGATAACTAG 939 45.05 MLLKMSESNFQDSIYCSGVMSNSGRDVNNIQNQVGDEEDDVTGGEESIDNPQLRFEDGGVISGPVSVMNRVEDIAPITGSYVPGADYNTMTGNGGADQLTLSFRGDVYAFDAVSPDKVQAVLLLLGGYEIPSGIPTVGSVPINQQGMDGFPVRSAQPQRAASLSRFREKRKERCFDKKIRYNVRKEVALRMQRKKGQFISSKGISDEVGSSSVLAQTLDSGQDDSMLETLCTHCGISSKSTPMMRRGPAGPRTLCNACGLKWANKGMLRDLSKVPNMGNQEPSMKQSEQSDGEANESDAAINVDIVASNGDN 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16555480 16559136 - evm.model.ptg000013l.821 HCH7g0821 548106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0821 312 ProSiteProfiles Tify domain profile. 92 127 IPR010399 -
HCH7g0821 312 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g0821 312 PANTHER GATA TRANSCRIPTION FACTOR 28 46 305 IPR045280 GO:0006355(InterPro)
HCH7g0821 312 ProSiteProfiles CCT domain profile. 159 201 IPR010402 GO:0005515(InterPro)
HCH7g0821 312 ProSiteProfiles GATA-type zinc finger domain profile. 231 273 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g0821 312 SMART tify_2 92 127 IPR010399 -
HCH7g0821 312 CDD ZnF_GATA 231 273 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g0821 312 Gene3D - 227 275 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
HCH7g0821 312 Pfam CCT motif 159 201 IPR010402 GO:0005515(InterPro)
HCH7g0821 312 SMART GATA_3 225 279 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g0821 312 MobiDBLite consensus disorder prediction 276 296 - -
HCH7g0821 312 Pfam tify domain 96 126 IPR010399 -
HCH7g0821 312 Pfam GATA zinc finger 231 266 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g0821 312 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 229 279 - -
HCH7g0821 312 MobiDBLite consensus disorder prediction 272 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0821 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0267 HCH-Chr4:1704653 HCH7g0821 HCH-Chr7:16555480 2.40E-61 dispersed
HCH4g1575 HCH-Chr4:12371255 HCH7g0821 HCH-Chr7:16555480 7.50E-58 dispersed
HCH7g0821 HCH-Chr7:16555480 HCH9g0616 HCH-Chr9:4110505 5.30E-06 dispersed
HCH7g0821 HCH-Chr7:16555480 HCH8g1283 HCH-Chr8:47985896 6.20E-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH4g1575 . 1 231 Tify Gene Family AT3G21175 56.7 1.7e-59 226.1
HCH4g0267 . 52 285 Tify Gene Family AT4G24470 50.9 3.8e-60 228.8
HCH4g1575 . 74 274 Tify Gene Family AT4G24470 53.5 4.1e-46 182.2
HCH4g1575 . 1 288 Tify Gene Family AT1G51600 60.5 2.4e-88 322.4
HCH4g0267 . 23 246 Tify Gene Family AT1G51600 51.8 8.0e-52 201.1
HCH7g0821 . 92 288 Tify Gene Family AT1G51600 57.6 1.4e-51 200.3
HCH4g0267 . 52 285 Tify Gene Family AT4G24470 50.9 3.8e-60 228.8
HCH4g1575 . 74 274 Tify Gene Family AT4G24470 53.5 4.1e-46 182.2
HCH4g1575 . 1 288 Tify Gene Family AT1G51600 60.5 2.4e-88 322.4
HCH4g0267 . 23 246 Tify Gene Family AT1G51600 51.8 8.0e-52 201.1
HCH7g0821 . 92 288 Tify Gene Family AT1G51600 57.6 1.4e-51 200.3
HCH4g1575 . 1 231 Tify Gene Family AT3G21175 56.7 1.7e-59 226.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33880 PF06203 CCT 7.30E-16 CL0281 HCH TF