Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH7g0821 | ATGCTATTAAAAATGTCAGAATCCAATTTCCAAGATTCAATATATTGTTCTGGAGTAATGAGCAACAGTGGCAGGGATGTGAACAACATTCAGAATCAAGTGGGCGACGAAGAAGATGATGTTACCGGTGGCGAAGAGTCCATAGACAATCCTCAGCTGCGATTTGAAGACGGTGGCGTGATAAGCGGCCCGGTCTCGGTGATGAACCGTGTTGAGGATATTGCTCCGATTACTGGTTCTTATGTTCCCGGCGCTGATTATAATACAATGACTGGAAATGGTGGTGCTGATCAGCTTACTTTGTCATTCCGAGGTGACGTTTACGCTTTTGACGCAGTCTCGCCTGATAAGGTGCAAGCGGTGCTATTGCTTTTAGGTGGATATGAAATTCCTTCTGGCATTCCTACTGTTGGAAGTGTACCCATCAACCAACAGGGTATGGATGGCTTTCCTGTCAGGTCAGCACAACCCCAGAGAGCTGCTTCATTAAGTAGGTTCAGAGAGAAGAGAAAAGAAAGGTGTTTTGACAAGAAAATCCGTTACAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGAAAGAAGGGTCAGTTTATATCCTCAAAAGGTATTTCAGATGAAGTGGGCTCATCTTCAGTATTGGCTCAGACACTGGATTCTGGACAAGATGATAGCATGTTAGAAACTTTATGTACGCACTGTGGAATCAGTTCAAAGTCCACTCCAATGATGCGTCGCGGGCCAGCTGGCCCAAGGACTCTGTGCAATGCATGTGGGTTGAAGTGGGCGAATAAGGGAATGTTGAGGGATCTTTCCAAGGTTCCAAACATGGGTAATCAGGAACCTTCCATGAAGCAGAGTGAACAGAGTGATGGTGAAGCTAATGAATCTGACGCTGCAATTAATGTGGATATTGTCGCATCTAATGGTGATAACTAG | 939 | 45.05 | MLLKMSESNFQDSIYCSGVMSNSGRDVNNIQNQVGDEEDDVTGGEESIDNPQLRFEDGGVISGPVSVMNRVEDIAPITGSYVPGADYNTMTGNGGADQLTLSFRGDVYAFDAVSPDKVQAVLLLLGGYEIPSGIPTVGSVPINQQGMDGFPVRSAQPQRAASLSRFREKRKERCFDKKIRYNVRKEVALRMQRKKGQFISSKGISDEVGSSSVLAQTLDSGQDDSMLETLCTHCGISSKSTPMMRRGPAGPRTLCNACGLKWANKGMLRDLSKVPNMGNQEPSMKQSEQSDGEANESDAAINVDIVASNGDN | 312 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 16555480 | 16559136 | - | evm.model.ptg000013l.821 | HCH7g0821 | 548106 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH7g0821 | 312 | ProSiteProfiles | Tify domain profile. | 92 | 127 | IPR010399 | - | |
HCH7g0821 | 312 | ProSitePatterns | GATA-type zinc finger domain. | 231 | 258 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH7g0821 | 312 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 46 | 305 | IPR045280 | GO:0006355(InterPro) | |
HCH7g0821 | 312 | ProSiteProfiles | CCT domain profile. | 159 | 201 | IPR010402 | GO:0005515(InterPro) | |
HCH7g0821 | 312 | ProSiteProfiles | GATA-type zinc finger domain profile. | 231 | 273 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH7g0821 | 312 | SMART | tify_2 | 92 | 127 | IPR010399 | - | |
HCH7g0821 | 312 | CDD | ZnF_GATA | 231 | 273 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH7g0821 | 312 | Gene3D | - | 227 | 275 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
HCH7g0821 | 312 | Pfam | CCT motif | 159 | 201 | IPR010402 | GO:0005515(InterPro) | |
HCH7g0821 | 312 | SMART | GATA_3 | 225 | 279 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH7g0821 | 312 | MobiDBLite | consensus disorder prediction | 276 | 296 | - | - | |
HCH7g0821 | 312 | Pfam | tify domain | 96 | 126 | IPR010399 | - | |
HCH7g0821 | 312 | Pfam | GATA zinc finger | 231 | 266 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH7g0821 | 312 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 229 | 279 | - | - | |
HCH7g0821 | 312 | MobiDBLite | consensus disorder prediction | 272 | 312 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH4g0267 | HCH-Chr4:1704653 | HCH7g0821 | HCH-Chr7:16555480 | 2.40E-61 | dispersed | |
HCH4g1575 | HCH-Chr4:12371255 | HCH7g0821 | HCH-Chr7:16555480 | 7.50E-58 | dispersed | |
HCH7g0821 | HCH-Chr7:16555480 | HCH9g0616 | HCH-Chr9:4110505 | 5.30E-06 | dispersed | |
HCH7g0821 | HCH-Chr7:16555480 | HCH8g1283 | HCH-Chr8:47985896 | 6.20E-07 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33880 | PF06203 | CCT | 7.30E-16 | CL0281 | HCH | TF |
Pathway information
