Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH7g0833 | ATGGCAAATAATCATTCAGAGACGGCAGGCGATGATTTTCTGGAACAAATTCTGGGGATTTCTCAATTTGGTTCAGGTGATCAAGGTTTAGTAGGAGCGGGAGGGGCTCAGGTCGCTCCTATGATGCTTCAACTAAGCTCCGGTGAAAATCACATCGCCGGAGCTGGGTTTCATGGACCCCCTCCTTTTCCCTTAGGGTTAAGCTTAGACCAAGGTAAATCCGGTTTTCTTAAACCTGAAGAACCTTCTGGAAGTGGGAAGCGCTTTATTGGTGAAGTTGTTGATATTCGACCTCCCTCTGTTAAAAATGTGTTTCAAGGCCAACATATGCACAATACTATTGCTGCCGCTCCACATCCACCAGCAATGCGCCCTAGGGTGAGGGCGAGACGAGGGCAGGCGACAGATCCACATAGCATTGCTGAGCGGTTGCGAAGAGAAAGGATTGCAGAGAGGATTAGGGCTTTGCAGGAGCTAGTTCCCAGCGTCAACAAGACGGACAGGGCTGCAATGCTTGACGAAATAGTGGACTATGTAAAGTTCCTACGTCTCCAAGTAAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCTGGTGCCGTGGCACCACTTGTAACGGATATTCCACTATCATCAGTTGAGGAAGAAGGAAGTGAAGGTGGTAGAAATCAACCAGCATGGGATAAGTGGTCGAATGATGGTACGGAGAGACAAGTCGCTAAGCTTATGGAAGAAAATGTGGGGGCTGCCATGCAATTCCTTCAATCAAAAGCTCTCTGCATCATGCCCATCTCGTTGGCTTCAGCAATTTATCATACACAGCCGCCGGACAGCTCTAGTGTTGTGAAGCCAGAGAGTAACCCTCCTCCCTAA | 870 | 48.51 | MANNHSETAGDDFLEQILGISQFGSGDQGLVGAGGAQVAPMMLQLSSGENHIAGAGFHGPPPFPLGLSLDQGKSGFLKPEEPSGSGKRFIGEVVDIRPPSVKNVFQGQHMHNTIAAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWDKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHTQPPDSSSVVKPESNPPP | 289 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 19648987 | 19652477 | - | evm.model.ptg000013l.833 | HCH7g0833 | 548118 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH7g0833 | 289 | Gene3D | - | 128 | 190 | IPR036638 | GO:0046983(InterPro) | |
HCH7g0833 | 289 | Pfam | Helix-loop-helix DNA-binding domain | 138 | 183 | IPR011598 | GO:0046983(InterPro) | |
HCH7g0833 | 289 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 131 | 192 | IPR036638 | GO:0046983(InterPro) | |
HCH7g0833 | 289 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 133 | 182 | IPR011598 | GO:0046983(InterPro) | |
HCH7g0833 | 289 | SMART | finulus | 139 | 188 | IPR011598 | GO:0046983(InterPro) | |
HCH7g0833 | 289 | FunFam | Basic helix-loop-helix transcription factor | 128 | 190 | - | - | |
HCH7g0833 | 289 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 86 | 268 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH7g0833 | HCH-Chr7:19648987 | HCH8g0922 | HCH-Chr8:45517757 | 5.90E-44 | dispersed | |
HCH4g1177 | HCH-Chr4:7893611 | HCH7g0833 | HCH-Chr7:19648987 | 1.20E-10 | transposed | |
HCH5g0018 | HCH-Chr5:103337 | HCH7g0833 | HCH-Chr7:19648987 | 1.30E-17 | transposed | |
HCH8g0190 | HCH-Chr8:7162775 | HCH7g0833 | HCH-Chr7:19648987 | 2.70E-77 | transposed | |
HCH10g1000 | HCH-Chr10:25370995 | HCH7g0833 | HCH-Chr7:19648987 | 2.70E-07 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33881 | PF00010 | HLH | 1.00E-07 | No_clan | HCH | TF |
Pathway information
