Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0833 ATGGCAAATAATCATTCAGAGACGGCAGGCGATGATTTTCTGGAACAAATTCTGGGGATTTCTCAATTTGGTTCAGGTGATCAAGGTTTAGTAGGAGCGGGAGGGGCTCAGGTCGCTCCTATGATGCTTCAACTAAGCTCCGGTGAAAATCACATCGCCGGAGCTGGGTTTCATGGACCCCCTCCTTTTCCCTTAGGGTTAAGCTTAGACCAAGGTAAATCCGGTTTTCTTAAACCTGAAGAACCTTCTGGAAGTGGGAAGCGCTTTATTGGTGAAGTTGTTGATATTCGACCTCCCTCTGTTAAAAATGTGTTTCAAGGCCAACATATGCACAATACTATTGCTGCCGCTCCACATCCACCAGCAATGCGCCCTAGGGTGAGGGCGAGACGAGGGCAGGCGACAGATCCACATAGCATTGCTGAGCGGTTGCGAAGAGAAAGGATTGCAGAGAGGATTAGGGCTTTGCAGGAGCTAGTTCCCAGCGTCAACAAGACGGACAGGGCTGCAATGCTTGACGAAATAGTGGACTATGTAAAGTTCCTACGTCTCCAAGTAAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCTGGTGCCGTGGCACCACTTGTAACGGATATTCCACTATCATCAGTTGAGGAAGAAGGAAGTGAAGGTGGTAGAAATCAACCAGCATGGGATAAGTGGTCGAATGATGGTACGGAGAGACAAGTCGCTAAGCTTATGGAAGAAAATGTGGGGGCTGCCATGCAATTCCTTCAATCAAAAGCTCTCTGCATCATGCCCATCTCGTTGGCTTCAGCAATTTATCATACACAGCCGCCGGACAGCTCTAGTGTTGTGAAGCCAGAGAGTAACCCTCCTCCCTAA 870 48.51 MANNHSETAGDDFLEQILGISQFGSGDQGLVGAGGAQVAPMMLQLSSGENHIAGAGFHGPPPFPLGLSLDQGKSGFLKPEEPSGSGKRFIGEVVDIRPPSVKNVFQGQHMHNTIAAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWDKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHTQPPDSSSVVKPESNPPP 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19648987 19652477 - evm.model.ptg000013l.833 HCH7g0833 548118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0833 289 Gene3D - 128 190 IPR036638 GO:0046983(InterPro)
HCH7g0833 289 Pfam Helix-loop-helix DNA-binding domain 138 183 IPR011598 GO:0046983(InterPro)
HCH7g0833 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 192 IPR036638 GO:0046983(InterPro)
HCH7g0833 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983(InterPro)
HCH7g0833 289 SMART finulus 139 188 IPR011598 GO:0046983(InterPro)
HCH7g0833 289 FunFam Basic helix-loop-helix transcription factor 128 190 - -
HCH7g0833 289 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 86 268 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0833 HCH-Chr7:19648987 HCH8g0922 HCH-Chr8:45517757 5.90E-44 dispersed
HCH4g1177 HCH-Chr4:7893611 HCH7g0833 HCH-Chr7:19648987 1.20E-10 transposed
HCH5g0018 HCH-Chr5:103337 HCH7g0833 HCH-Chr7:19648987 1.30E-17 transposed
HCH8g0190 HCH-Chr8:7162775 HCH7g0833 HCH-Chr7:19648987 2.70E-77 transposed
HCH10g1000 HCH-Chr10:25370995 HCH7g0833 HCH-Chr7:19648987 2.70E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33881 PF00010 HLH 1.00E-07 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0833 - - - 0.0