Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0854 ATGTTTCCTGCAACCATGTCCAATTCAACTTCTTTGTCTGAAGAAGCTAGTGTCTCTTCTGGTACTAGAGTCCAGGATTTCACCTGCTTAAATCCAATCCTTTCATCCTTTTCTGATCCGCCTCAAAAGATTAAGAAGAAAAGAAGCCTCCCAGGAAACCCAGATCCAGATGCAGAAGTGATTGCCCTATCACCCAAGACATTGCTGGCTACAAACAGATTTGTTTGTGAGATTTGCAATAAAGGTTTCCAGAGAGATCAAAACTTGCAGCTTCATAGGAGAGGACATAATCTTCCATGGAAATTGAAGCAAAGAAACAGCAAAGAGATTAAAAAGAAAGCATATGTTTGCCCAGAGCCAACTTGTGTTCATCATCATCCATCAAGGGCTTTGGGAGATCTCACAGGAATCAAAAAGCATTTCTGCAGAAAACATGGTGAGAAGAAATGGAAGTGTGATAAATGCTCTAAAGTTTATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAACCTGTGGCACTAGAGAATATAGATGTGACTGTGGAACCCTTTTCTCCAGGAAGGATAGCTTCATTACCCACAGAGCTTTCTGTGATGCTTTGGCTGAAGAAAGTGCAAGGCTCTCAGCTAACCAGTTAGCCATGGCTGCTGCTGCCGCGGCTGTTAGCACCACCATGAACACAACATCTTCTCAAACTCTCTTCCCTTTCGTTGGTGTTGGCGGCCACCACCACCATCATCAACAGTTCCCCAACTCACATTTACCGCCACCGCCGCTGCCGCCTTCACAGACCCTCAATCCGTGGGATAACTCACACCAAAACCCTAACCCTAATAATAATAATAATAGTCTCCAAATTAAGCCTGAAGAATCTCATCCTCTTCAAAATTTTCACCAAATTATTCCAGCATTGCCCCTCTCCTCTTCCCACTCTAGTTCTACCAATCCATTTAGTTTAATCCAAGAATCCACCTCCCACAACAAGTCATCCATGATAACATCACCCTTCAGAAATCTTCATGTGACCACACAACCTACCTCAAATGCTGCCACCTCAGCTCACTTGTCAGCCACTGCCCTACTTCAAAAGGCTGCAACAGTTGGTGCAGCTAAATCTGCTGCTCATCGAGGCCAGGCTGAGTCTGTGGGACACATGACTCTCCACCATCTTAACATGGGAATGGGAATCAGAATCGGAGAGTTTGGGACACCGAATCACATCGGACCGGACTACGGCCAGCTCGGAGGCCTTACGTCTTCCGCGAGCATTGCCGTTAGCGATCACCTAACAAGGGACTTTCTCGGTCTTACCGGAGATGGGAATGACGGTTCGGGGGATGGTGGAGGAGGAGTTGACGTTAGCATGAGCGTTAAGGATATGCTAAAGTACGCAGGGGGATTGGAGTTGGAACAGTACGGCCGTGGCCATCACCCGTTGTTTAAGCCCCATGGTACTTTTGGATACGCTGAGGCAGCTGCCTCTGAGACATGGGGGGACTGCTGA 1506 46.81 MFPATMSNSTSLSEEASVSSGTRVQDFTCLNPILSSFSDPPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEIKKKAYVCPEPTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAMAAAAAAVSTTMNTTSSQTLFPFVGVGGHHHHHQQFPNSHLPPPPLPPSQTLNPWDNSHQNPNPNNNNNSLQIKPEESHPLQNFHQIIPALPLSSSHSSSTNPFSLIQESTSHNKSSMITSPFRNLHVTTQPTSNAATSAHLSATALLQKAATVGAAKSAAHRGQAESVGHMTLHHLNMGMGIRIGEFGTPNHIGPDYGQLGGLTSSASIAVSDHLTRDFLGLTGDGNDGSGDGGGGVDVSMSVKDMLKYAGGLELEQYGRGHHPLFKPHGTFGYAEAAASETWGDC 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23632664 23635624 - evm.model.ptg000013l.854 HCH7g0854 548139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0854 501 MobiDBLite consensus disorder prediction 240 288 - -
HCH7g0854 501 MobiDBLite consensus disorder prediction 266 288 - -
HCH7g0854 501 SUPERFAMILY beta-beta-alpha zinc fingers 73 170 IPR036236 -
HCH7g0854 501 SMART c2h2final6 74 96 IPR013087 -
HCH7g0854 501 SMART c2h2final6 150 170 IPR013087 -
HCH7g0854 501 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 39 444 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH7g0854 501 Gene3D Classic Zinc Finger 144 208 - -
HCH7g0854 501 FunFam protein indeterminate-domain 12-like 53 121 - -
HCH7g0854 501 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 111 145 - -
HCH7g0854 501 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 176 214 - -
HCH7g0854 501 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 149 173 - -
HCH7g0854 501 Gene3D Classic Zinc Finger 53 122 - -
HCH7g0854 501 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
HCH7g0854 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
HCH7g0854 501 Pfam Zinc finger, C2H2 type 74 96 IPR013087 -
HCH7g0854 501 FunFam protein indeterminate-domain 5, chloroplastic-like 128 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1486 HCH-Chr4:11238449 HCH7g0854 HCH-Chr7:23632664 2.30E-87 dispersed
HCH7g0286 HCH-Chr7:2016471 HCH7g0854 HCH-Chr7:23632664 6.80E-84 dispersed
HCH7g0854 HCH-Chr7:23632664 HCH9g0599 HCH-Chr9:4017327 3.30E-87 dispersed
HCH7g0854 HCH-Chr7:23632664 HCH6g0106 HCH-Chr6:1325702 8.80E-88 transposed
HCH7g0854 HCH-Chr7:23632664 HCH2g0698 HCH-Chr2:50767069 8.80E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33883 PF00096 zf-C2H2 0.005 CL0361 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0854 K25870 - csv:101208253 557.755