Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH7g0856 | ATGCTTAATCAAATTTATATTTTGTCATTGAAACAGGAAACGGAACAGTTGAAGACTGCATTAGAGAAGAGTGTCTTACAGAGGCAGGCTTGGCCAAATCATAAATCCTTATCTCCTGTAGGGGAACACGATGTAACAATTAAATATGAACCCGATCGTGTGGAAATTCCCTCAGATGGGACTGATGTATGGGAAATTGATCCTAGACATCTGAAGTTTGAGCATAAAGTTGCATCTGGGTCATATGGGGATTTGTACAAAGGTACATACTGCAGTCAGGAAGTGGCTATTAAAATCCTCAAACCCGAGCGTGTAAATTCAGATATGCAAAGTGAGTTTGCTCAGGAGGTGTATATTATGAGGAAAGTCAGGCACAAAAATGTTGTACAATTTATTGGTGCATGTACTAAGCCCCCCAGCTTGTGCATTGTAACAGGTGAATCAAGCAAAGAGTTCCTTAAGTTCCCTGGGTTACCAGTATAG | 483 | 40.37 | MLNQIYILSLKQETEQLKTALEKSVLQRQAWPNHKSLSPVGEHDVTIKYEPDRVEIPSDGTDVWEIDPRHLKFEHKVASGSYGDLYKGTYCSQEVAIKILKPERVNSDMQSEFAQEVYIMRKVRHKNVVQFIGACTKPPSLCIVTGESSKEFLKFPGLPV | 160 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 24397780 | 24407716 | - | evm.model.ptg000013l.856 | HCH7g0856 | 548141 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH7g0856 | 160 | SUPERFAMILY | Protein kinase-like (PK-like) | 54 | 145 | IPR011009 | - | |
| HCH7g0856 | 160 | Gene3D | Phosphorylase Kinase; domain 1 | 60 | 147 | - | - | |
| HCH7g0856 | 160 | Pfam | Protein tyrosine and serine/threonine kinase | 71 | 145 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| HCH7g0856 | 160 | ProSiteProfiles | Protein kinase domain profile. | 71 | 160 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| HCH7g0856 | 160 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 65 | 145 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
| HCH7g0856 | 160 | FunFam | Serine/threonine-protein kinase isoform 1 | 61 | 149 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH7g0856 | HCH-Chr7:24397780 | HCH12g0705 | HCH-Chr12:4322882 | 1.70E-13 | dispersed | |
| HCH7g0856 | HCH-Chr7:24397780 | HCH7g0439 | HCH-Chr7:3248409 | 7.40E-73 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 81642 | PF07714 | PK_Tyr_Ser-Thr | 1.50E-14 | CL0016 | HCH | PK |
Pathway information