Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0902 ATGGGTTTCATCCAAATGGTTATTTATTTTCTGGGATTGATGGCAAATCTTCAAAGTTGCATGGGAGATTATAATGGTGCATCTCCTCAGCTAAATGATGATATCTTAGGCTTGATTGTCTTCAAATCTGACTTACATGATCCTTCTTCATTTCTTTCTTCATGGAATGAAGATGATAAGTCTCCATGTTCATGGCAATTCATAAAATGCAACCCTGTCAATGGTAGAGTTTCAGAAGTTTCCATTGATGGACTTGGTTTATCAGGAAAAATTGGAAGAGGCCTTGAAAAGTTGCAACATCTGAAGGTTTTGTCTCTCTCAAATAATAACTTCACTGGTAATCTTAGCCCTGAGCTTCTTCTCCCACCAAGCCTTGACAAAGTTAATCTCAGCCACAACACTCTTTCTGGTCGTATCCCTCCTTCTCTATTGACTATGTCTTCTATCAGATTCCTTGATTTTTCTGATAATCTTTTTTCTGGACCTGTTTCTGATAATATGTTTGATAATTGCTCTTCTCTTCATTACCTTTCTTTTGCCACCAACTTGCTTGAAGGGCCAATTCCTATTACATTGCTTAGATGTTTGTCTTTGAATGCACTCAATCTCTCAAACAATCGCTTCTCCGGTAGCCTCGAATTGGCTTCCGGACTTTGGTCATCGTTAACGAGGCTTCGGACACTTGATCTTTCAAACAATGCAATCTCTGGATATTTACCACAAGGAATATCATCCATACATAACTTGAAAGAGCTCAAATTGCAGAGAAATCAGTTCTCAGGACCACTGCCTACAGATATAGGATTGTGTCCCCACTTGGCTACATTGGATATTAGCCGTAATCTTTTCACCGGGACGCTTCCGGAATCGATTCATTCCCTGAGTTCCTTGACTTTCTTCAATATAGCATACAATATGTTTTCAGGTGATTTCCCACAGTGGATTGGAAGCTTGACCAGTGTGGAGTATTTAGATTTCTCAAGCAATGTCTTTACTGGAAGCCTTCCTCTATCAATTGGTGACCTGAGATCTATCACTTATATTAGTTTTTCAGACAACAAACTGTCTGGAAGTATCCCTGAGTCAATGATTCACTGTAGCAAGTTATCTGTAATTAAGTTGGAAGGGAACAGCTTTAATGGTGGGATACCTGTGGGATTGTTTGAACTGGGTTTACAGGAGATGGATTTTTCACATAATGCACTCACAGGATCAATCCCAGCAGGTTCAAGCAGGCTCTATGAATCACTCACCTCATTGGACCTGTCAAAGAACAATCTTCAAGGAAATTTTCCTGCAGAAATTGGTTTGTTTACCAATTTGAGATACTTGAATTTGTCATGGAACAATTTTCAGTCAAAGATTCCCCCAGAATTGGGATTCTTTCAAAATTTAACAGTACTAGACCTTAGAAACAGTGCCATACATGGTTCAATCCCTGGGGATCTATGTGATTCAGGGAGTCTGGGTATTCTTCAACTTGATGGTAATTTATTAACTGGCCCAATTCCAGAAGAGATTGGAAACTGCTCATCCCTTTACTTGCTGAGTTTGTCCCATAATAATATAAGTGGGTCTATTCCAAAGTCAATCTCAGAGCTAAGCAAGCTCAAGATTCTAAGACTAGAATCAAATGAATTGAGTGGAGAAATACCACAAGAGCTTGGAATACTGGAAAATCTCCTTGCTGTGAATATATCATACAATAGGCTTACAGGCAGGCTTCCTACTGTGGGCATATTTCCAAGCTTGGATCAAAGTGCTTTGCAGGGGAATTTGGGCATTTGCTCACCCTTATTGAAGGGACCTTGTAAAATGAATGTACCTAAACCCCTTGTGCTTGACCCAAATGCATATGTCAACCAAATGGGTGGACAAAGCAACAGAAATAAGCCAACAGATAACATAAAACCGTCTCATCATGTGTTTTTTAGTGTTTCTGCCATTGTAGCGATTTCAGCTGCTATTTTGATTGCTTGTGGGGTGCTTGTGATTACCTTGCTAAATGTATCAGCACGTAGGAGATCGCTTGCATTCGTGGACAATGCATTGGAGAGTATGTGTTCAAGTTCTTCCAAATCTGGAACTGCAACAACTGGAAAACTCATTCTTTTAGACTCGAACTCGAGTGCCTCGCCCAACTGGGTAAGTAACCATGAAGAATTACTAAACAAAGGCTCTGAGATAGGTGCTGGAGTTTTTGGAACAGTTTACAAGGTTTCATTGGGAGATCAAGGTGGAAGAGTGGTAGCAATAAAGAAGCTTATAAGATCAAATATCATCCAAAATCCAGAAGACTTCGACCGAGAAATCCGAATCCTAGGAAAGGCCAAGCACCCAAATCTGATAAGCCTAAAGGGTTACTACTGGACTACTCAAACTCAGCTACTGGTAATGGAGTATGCTCCCAATGGAAGTCTTCAAACACATCTGCATGAAAGGCTTCCTTCAACTCAGCCACTCTCATGGGAAAACAGATTCAAGATTGTGGTGGGGACAGCCAAAGGACTTGCCCATTTACACCATTCATTCCGTCCACCGATTGTTCACTACAACCTCAAGCCGAGCAACATCTTGCTCGACAAAAATTTCAACCCGAAGATTTCAGATTACGGATTGGCAAGGCTGCTAACGAAGCTCGACAAACACATAATGAGCAACAGGTTCCAAAGTGCATTGGGCTATGTTGCACCAGAATTGGCATGCCAGAGCATAAGGGTCAATGAGAAATGTGATGTGCATGGTTTTGGAGTCATGATTCTTGAGATAGTGAGTGGTAGAAGGCCAGTGGAATATGGAGAAGACAATGTAGTTATCTTAACAGACCATGTCAAGTATTTGCTTGAGAGGGGCAATGTGTTAGATTGTGTTGATCCATGCATGACTGACTACTCAGAAGACGAAGTCGTACCGATTCTTAAACTGGCTCTGGTTTGTACTTCTCAAATACCTTCGAGCAGACCTTCCATGGCGGAAGTGGTGCAAATTCTCCAAGTTATCAAGACCCCACTTCCACAAAGAATAGAAGCATTTTGA 3036 40.88 MGFIQMVIYFLGLMANLQSCMGDYNGASPQLNDDILGLIVFKSDLHDPSSFLSSWNEDDKSPCSWQFIKCNPVNGRVSEVSIDGLGLSGKIGRGLEKLQHLKVLSLSNNNFTGNLSPELLLPPSLDKVNLSHNTLSGRIPPSLLTMSSIRFLDFSDNLFSGPVSDNMFDNCSSLHYLSFATNLLEGPIPITLLRCLSLNALNLSNNRFSGSLELASGLWSSLTRLRTLDLSNNAISGYLPQGISSIHNLKELKLQRNQFSGPLPTDIGLCPHLATLDISRNLFTGTLPESIHSLSSLTFFNIAYNMFSGDFPQWIGSLTSVEYLDFSSNVFTGSLPLSIGDLRSITYISFSDNKLSGSIPESMIHCSKLSVIKLEGNSFNGGIPVGLFELGLQEMDFSHNALTGSIPAGSSRLYESLTSLDLSKNNLQGNFPAEIGLFTNLRYLNLSWNNFQSKIPPELGFFQNLTVLDLRNSAIHGSIPGDLCDSGSLGILQLDGNLLTGPIPEEIGNCSSLYLLSLSHNNISGSIPKSISELSKLKILRLESNELSGEIPQELGILENLLAVNISYNRLTGRLPTVGIFPSLDQSALQGNLGICSPLLKGPCKMNVPKPLVLDPNAYVNQMGGQSNRNKPTDNIKPSHHVFFSVSAIVAISAAILIACGVLVITLLNVSARRRSLAFVDNALESMCSSSSKSGTATTGKLILLDSNSSASPNWVSNHEELLNKGSEIGAGVFGTVYKVSLGDQGGRVVAIKKLIRSNIIQNPEDFDREIRILGKAKHPNLISLKGYYWTTQTQLLVMEYAPNGSLQTHLHERLPSTQPLSWENRFKIVVGTAKGLAHLHHSFRPPIVHYNLKPSNILLDKNFNPKISDYGLARLLTKLDKHIMSNRFQSALGYVAPELACQSIRVNEKCDVHGFGVMILEIVSGRRPVEYGEDNVVILTDHVKYLLERGNVLDCVDPCMTDYSEDEVVPILKLALVCTSQIPSSRPSMAEVVQILQVIKTPLPQRIEAF 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 34129620 34132869 + evm.model.ptg000013l.902 HCH7g0902 548187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0902 1011 Gene3D Ribonuclease Inhibitor 327 607 IPR032675 -
HCH7g0902 1011 Pfam Protein kinase domain 724 995 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0902 1011 SUPERFAMILY RNI-like 257 576 - -
HCH7g0902 1011 Pfam Leucine Rich Repeat 416 436 IPR001611 GO:0005515(InterPro)
HCH7g0902 1011 Pfam Leucine Rich Repeat 248 268 IPR001611 GO:0005515(InterPro)
HCH7g0902 1011 Pfam Leucine Rich Repeat 124 144 IPR001611 GO:0005515(InterPro)
HCH7g0902 1011 Pfam Leucine Rich Repeat 224 245 IPR001611 GO:0005515(InterPro)
HCH7g0902 1011 Pfam Leucine Rich Repeat 440 460 IPR001611 GO:0005515(InterPro)
HCH7g0902 1011 Pfam Leucine Rich Repeat 512 534 IPR001611 GO:0005515(InterPro)
HCH7g0902 1011 Pfam Leucine Rich Repeat 100 119 IPR001611 GO:0005515(InterPro)
HCH7g0902 1011 PANTHER OS05G0588300 PROTEIN 337 459 IPR050994 -
HCH7g0902 1011 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
HCH7g0902 1011 Gene3D Transferase(Phosphotransferase) domain 1 802 1007 - -
HCH7g0902 1011 ProSiteProfiles Protein kinase domain profile. 723 1000 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0902 1011 Gene3D Phosphorylase Kinase; domain 1 709 801 - -
HCH7g0902 1011 Pfam Leucine rich repeat 271 329 IPR001611 GO:0005515(InterPro)
HCH7g0902 1011 Gene3D Ribonuclease Inhibitor 36 193 IPR032675 -
HCH7g0902 1011 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 717 801 - -
HCH7g0902 1011 FunFam Inactive leucine-rich repeat receptor-like protein kinase 316 607 - -
HCH7g0902 1011 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 190 288 - -
HCH7g0902 1011 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 802 1006 - -
HCH7g0902 1011 Gene3D Ribonuclease Inhibitor 194 314 IPR032675 -
HCH7g0902 1011 SMART LRR_typ_2 246 270 IPR003591 -
HCH7g0902 1011 SMART LRR_typ_2 438 462 IPR003591 -
HCH7g0902 1011 SMART LRR_typ_2 534 558 IPR003591 -
HCH7g0902 1011 SMART LRR_typ_2 222 245 IPR003591 -
HCH7g0902 1011 SMART LRR_typ_2 98 122 IPR003591 -
HCH7g0902 1011 SUPERFAMILY Protein kinase-like (PK-like) 722 1001 IPR011009 -
HCH7g0902 1011 FunFam Leucine-rich repeat receptor-like protein kinase 31 189 - -
HCH7g0902 1011 CDD STKc_IRAK 729 998 - -
HCH7g0902 1011 SUPERFAMILY L domain-like 58 329 - -
HCH7g0902 1011 ProSitePatterns Protein kinases ATP-binding region signature. 729 754 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0270 HCH-Chr1:44202653 HCH7g0902 HCH-Chr7:34129620 5.20E-28 dispersed
HCH1g0271 HCH-Chr1:44278625 HCH7g0902 HCH-Chr7:34129620 1.60E-86 dispersed
HCH1g0272 HCH-Chr1:44280014 HCH7g0902 HCH-Chr7:34129620 2.70E-28 dispersed
HCH6g0960 HCH-Chr6:44410901 HCH7g0902 HCH-Chr7:34129620 6.80E-83 dispersed
HCH7g0902 HCH-Chr7:34129620 HCH3g0284 HCH-Chr3:1800580 4.30E-49 dispersed
HCH10g0958 HCH-Chr10:14908058 HCH7g0902 HCH-Chr7:34129620 1.20E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81643 PF00069 Pkinase 3.00E-42 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0902 - - - 0.0