Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH7g0939 | ATGGAAAAGGAATTCTTCATCAATGGAGGATGCAACTTGTACGGGATGGAAATCCAATCTAATGAGCTTGCCTCCAATGCCATATTCAATCCAAATTGGGATAATAATAATAATAACAATTCTATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGCTCAATTGTCTCTTCTCCGGTCACTTCCCACGCCGGAACCATCGTCGGCGGCGCCGGTGACAACTTGATGATGAGAGAATTACTTGGAAGGCTTGGAAGCATTTGCAATTCAGGTGAAATTTCTCCTCATTCTTACATCGGCGGCGGGACTAACAACAATAGCACCAACACTTCTTGTTACAACACGCCTTTGAATTCCCCTCCAAAGCTCAATCTCTCAGTAATGGATTCACAGATCAGAGGGAATTTATCACTTTCTGGCACCAGTTTTCTTTCCCATCAAAATTTGGCGCCTTTTTCCACCGACCCAGGATTTGCTGAGAGGGCTGCTAGATTTTCTTGCTTTGGTACTAGTAGGAATCTTGGAAGCTTAAATGAAACTCATGAATTGGCTAATATTAATAGATCAATGCCTGGAGCTGGAGTAGAATCTGGTAAACTTTCTAGAGTTTCTAGTAACAAGTCTTTCAACGTTGCTGGTGGAATTGGATCTCAAATGGGAATTCCAGAGAAACCGGATTTGATTCCTAACAAAAAGTTGAACAGGTTTTCGAGATCTTCGACTCCTGAAAATGCCGGTGATTCCCGGGAGGGGTCATCTGTTTCTGAGCAGATTACAAGTAGGGAATTGGGATCTAAAGGGAAAGTTGAAACCAACACTAGAAAAAGGAAATCAGTTCACACCGGGGAAGCAAAGGATATTAAGGCTGCAGTTGAGAACAATGAATCAAATGGAAAGAAAATCAAGCCAAGTGAAGTTCCTAAGAAAGAGATGGATGCTGCAAAGGGGAAGCCAGAGGCTAAAGATGGCATGAAAACTGCGGCGGATGCGAATCAGAAGGAAACTAATGATAATTCGAAGCCTCCGGAACCTCCAAAGGACTATATCCATGTTAGAGCAAGAAGGGGTCAAGCTACAGATAGCCACAGTTTAGCTGAAAGAGTTCGACGAGAGAAAATCAGTAAAAGGATGAAGTTTCTTCAAGATCTCGTTCCCGGTTGCAATAAGGTAACGGGTAAGGCCGTGATGCTTGATGAAATCATAAACTATGTACAGTCTTTGCAGCGCCAGGTCGAGTTTCTTTCAATGAAGTTGTCTACTGTTAATCCAAGAATGGAATTTAACATGGAGACTCTTTTGCCAAAGGAAATCTTCAAATCCCCCGGTTCGTTACCGCACCCTCTTCACCCTCTGGATTCATCTGCGCCTCCATTCGCATATGAATATCAGTCCATGCACATGCCACCTCTTCACAATGACATTTCTCATGGAACTGAGAAGCAATTCCCAGTTACTTCAGCAAGTGATGTGATGCAAAGAAATCTAAATGGGCAAGTGCCAACCGGGTACAGCGAAGTTAGCATCGATGTTTCAAAATTCTGGGAGAACGATCTCCACTCTGTAGTTCAGATGGGTTATGGACAGAACCAGCTGCAGAACATTCATGGCTCCATGGCTGCAGATGAGATAAAAAGTGAATTGTAA | 1644 | 43.07 | MEKEFFINGGCNLYGMEIQSNELASNAIFNPNWDNNNNNNSMDQSDLFESTLSSIVSSPVTSHAGTIVGGAGDNLMMRELLGRLGSICNSGEISPHSYIGGGTNNNSTNTSCYNTPLNSPPKLNLSVMDSQIRGNLSLSGTSFLSHQNLAPFSTDPGFAERAARFSCFGTSRNLGSLNETHELANINRSMPGAGVESGKLSRVSSNKSFNVAGGIGSQMGIPEKPDLIPNKKLNRFSRSSTPENAGDSREGSSVSEQITSRELGSKGKVETNTRKRKSVHTGEAKDIKAAVENNESNGKKIKPSEVPKKEMDAAKGKPEAKDGMKTAADANQKETNDNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLSTVNPRMEFNMETLLPKEIFKSPGSLPHPLHPLDSSAPPFAYEYQSMHMPPLHNDISHGTEKQFPVTSASDVMQRNLNGQVPTGYSEVSIDVSKFWENDLHSVVQMGYGQNQLQNIHGSMAADEIKSEL | 547 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 37872082 | 37874367 | + | evm.model.ptg000013l.939 | HCH7g0939 | 548224 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH7g0939 | 547 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 357 | 407 | IPR011598 | GO:0046983(InterPro) | |
HCH7g0939 | 547 | MobiDBLite | consensus disorder prediction | 267 | 328 | - | - | |
HCH7g0939 | 547 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 355 | 427 | IPR036638 | GO:0046983(InterPro) | |
HCH7g0939 | 547 | MobiDBLite | consensus disorder prediction | 233 | 266 | - | - | |
HCH7g0939 | 547 | Pfam | Helix-loop-helix DNA-binding domain | 361 | 408 | IPR011598 | GO:0046983(InterPro) | |
HCH7g0939 | 547 | CDD | bHLH_AtBPE_like | 347 | 432 | - | - | |
HCH7g0939 | 547 | SMART | finulus | 363 | 413 | IPR011598 | GO:0046983(InterPro) | |
HCH7g0939 | 547 | FunFam | Basic helix-loop-helix transcription factor | 354 | 427 | - | - | |
HCH7g0939 | 547 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 150 | 493 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
HCH7g0939 | 547 | MobiDBLite | consensus disorder prediction | 212 | 347 | - | - | |
HCH7g0939 | 547 | Gene3D | - | 354 | 429 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH3g0174 | HCH-Chr3:1135336 | HCH7g0939 | HCH-Chr7:37872082 | 7.70E-30 | dispersed | |
HCH4g0568 | HCH-Chr4:3716839 | HCH7g0939 | HCH-Chr7:37872082 | 1.90E-34 | dispersed | |
HCH5g1042 | HCH-Chr5:12081685 | HCH7g0939 | HCH-Chr7:37872082 | 7.80E-62 | dispersed | |
HCH7g0547 | HCH-Chr7:4253811 | HCH7g0939 | HCH-Chr7:37872082 | 7.30E-41 | dispersed | |
HCH7g0939 | HCH-Chr7:37872082 | HCH8g1341 | HCH-Chr8:48313935 | 5.90E-37 | dispersed | |
HCH7g0939 | HCH-Chr7:37872082 | HCH1g0847 | HCH-Chr1:57085334 | 4.10E-46 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33889 | PF00010 | HLH | 1.20E-05 | No_clan | HCH | TF |
Pathway information
