Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0939 ATGGAAAAGGAATTCTTCATCAATGGAGGATGCAACTTGTACGGGATGGAAATCCAATCTAATGAGCTTGCCTCCAATGCCATATTCAATCCAAATTGGGATAATAATAATAATAACAATTCTATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGCTCAATTGTCTCTTCTCCGGTCACTTCCCACGCCGGAACCATCGTCGGCGGCGCCGGTGACAACTTGATGATGAGAGAATTACTTGGAAGGCTTGGAAGCATTTGCAATTCAGGTGAAATTTCTCCTCATTCTTACATCGGCGGCGGGACTAACAACAATAGCACCAACACTTCTTGTTACAACACGCCTTTGAATTCCCCTCCAAAGCTCAATCTCTCAGTAATGGATTCACAGATCAGAGGGAATTTATCACTTTCTGGCACCAGTTTTCTTTCCCATCAAAATTTGGCGCCTTTTTCCACCGACCCAGGATTTGCTGAGAGGGCTGCTAGATTTTCTTGCTTTGGTACTAGTAGGAATCTTGGAAGCTTAAATGAAACTCATGAATTGGCTAATATTAATAGATCAATGCCTGGAGCTGGAGTAGAATCTGGTAAACTTTCTAGAGTTTCTAGTAACAAGTCTTTCAACGTTGCTGGTGGAATTGGATCTCAAATGGGAATTCCAGAGAAACCGGATTTGATTCCTAACAAAAAGTTGAACAGGTTTTCGAGATCTTCGACTCCTGAAAATGCCGGTGATTCCCGGGAGGGGTCATCTGTTTCTGAGCAGATTACAAGTAGGGAATTGGGATCTAAAGGGAAAGTTGAAACCAACACTAGAAAAAGGAAATCAGTTCACACCGGGGAAGCAAAGGATATTAAGGCTGCAGTTGAGAACAATGAATCAAATGGAAAGAAAATCAAGCCAAGTGAAGTTCCTAAGAAAGAGATGGATGCTGCAAAGGGGAAGCCAGAGGCTAAAGATGGCATGAAAACTGCGGCGGATGCGAATCAGAAGGAAACTAATGATAATTCGAAGCCTCCGGAACCTCCAAAGGACTATATCCATGTTAGAGCAAGAAGGGGTCAAGCTACAGATAGCCACAGTTTAGCTGAAAGAGTTCGACGAGAGAAAATCAGTAAAAGGATGAAGTTTCTTCAAGATCTCGTTCCCGGTTGCAATAAGGTAACGGGTAAGGCCGTGATGCTTGATGAAATCATAAACTATGTACAGTCTTTGCAGCGCCAGGTCGAGTTTCTTTCAATGAAGTTGTCTACTGTTAATCCAAGAATGGAATTTAACATGGAGACTCTTTTGCCAAAGGAAATCTTCAAATCCCCCGGTTCGTTACCGCACCCTCTTCACCCTCTGGATTCATCTGCGCCTCCATTCGCATATGAATATCAGTCCATGCACATGCCACCTCTTCACAATGACATTTCTCATGGAACTGAGAAGCAATTCCCAGTTACTTCAGCAAGTGATGTGATGCAAAGAAATCTAAATGGGCAAGTGCCAACCGGGTACAGCGAAGTTAGCATCGATGTTTCAAAATTCTGGGAGAACGATCTCCACTCTGTAGTTCAGATGGGTTATGGACAGAACCAGCTGCAGAACATTCATGGCTCCATGGCTGCAGATGAGATAAAAAGTGAATTGTAA 1644 43.07 MEKEFFINGGCNLYGMEIQSNELASNAIFNPNWDNNNNNNSMDQSDLFESTLSSIVSSPVTSHAGTIVGGAGDNLMMRELLGRLGSICNSGEISPHSYIGGGTNNNSTNTSCYNTPLNSPPKLNLSVMDSQIRGNLSLSGTSFLSHQNLAPFSTDPGFAERAARFSCFGTSRNLGSLNETHELANINRSMPGAGVESGKLSRVSSNKSFNVAGGIGSQMGIPEKPDLIPNKKLNRFSRSSTPENAGDSREGSSVSEQITSRELGSKGKVETNTRKRKSVHTGEAKDIKAAVENNESNGKKIKPSEVPKKEMDAAKGKPEAKDGMKTAADANQKETNDNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLSTVNPRMEFNMETLLPKEIFKSPGSLPHPLHPLDSSAPPFAYEYQSMHMPPLHNDISHGTEKQFPVTSASDVMQRNLNGQVPTGYSEVSIDVSKFWENDLHSVVQMGYGQNQLQNIHGSMAADEIKSEL 547
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 37872082 37874367 + evm.model.ptg000013l.939 HCH7g0939 548224
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0939 547 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 357 407 IPR011598 GO:0046983(InterPro)
HCH7g0939 547 MobiDBLite consensus disorder prediction 267 328 - -
HCH7g0939 547 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 427 IPR036638 GO:0046983(InterPro)
HCH7g0939 547 MobiDBLite consensus disorder prediction 233 266 - -
HCH7g0939 547 Pfam Helix-loop-helix DNA-binding domain 361 408 IPR011598 GO:0046983(InterPro)
HCH7g0939 547 CDD bHLH_AtBPE_like 347 432 - -
HCH7g0939 547 SMART finulus 363 413 IPR011598 GO:0046983(InterPro)
HCH7g0939 547 FunFam Basic helix-loop-helix transcription factor 354 427 - -
HCH7g0939 547 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 150 493 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
HCH7g0939 547 MobiDBLite consensus disorder prediction 212 347 - -
HCH7g0939 547 Gene3D - 354 429 IPR036638 GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0174 HCH-Chr3:1135336 HCH7g0939 HCH-Chr7:37872082 7.70E-30 dispersed
HCH4g0568 HCH-Chr4:3716839 HCH7g0939 HCH-Chr7:37872082 1.90E-34 dispersed
HCH5g1042 HCH-Chr5:12081685 HCH7g0939 HCH-Chr7:37872082 7.80E-62 dispersed
HCH7g0547 HCH-Chr7:4253811 HCH7g0939 HCH-Chr7:37872082 7.30E-41 dispersed
HCH7g0939 HCH-Chr7:37872082 HCH8g1341 HCH-Chr8:48313935 5.90E-37 dispersed
HCH7g0939 HCH-Chr7:37872082 HCH1g0847 HCH-Chr1:57085334 4.10E-46 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33889 PF00010 HLH 1.20E-05 No_clan HCH TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0939 - - - 0.0