Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0943 ATGGAGGGCGATTTTTCGCTCCCATCAGCAGCTAACATGAACGAGGATGAAGAAATGGGCCTTCCAGACGACGAAGCAGTTAGCCTGATTCAAAAAATTGACGAAGAGAAGGAGATTGGAAAGAATGGGCTCAAGAAGAAACTTATTAAGGAAGGTGAGGGATGGGAAACTCCTGATACTGGCGATGAAGTCGAAGTACATTATACTGGAACGCTTCTTGATGGGACTCAGTTTGATTCGAGCCGTGACCGAGGGGCGCCTTTTAAGTTCAAGCTTGGCGAAGGACAAGTGATTAAAGGATGGGATGAAGGTATCAGAACTATGAAGAAAGGTGAAAATGCAATTTTCACGGTACCTCCTGAATTGGCTTATGGGGAGTCCGGTTCTACTCCGACCATTCCACCGAAGGCTACTCTTCAGTTTGATGTGGAGTTACTCTCTTGGCATCGTGTCAAAGATATCTGCCAAGATGGAGGAATTTACAAGAAAATACTTGTTAAGGGAGATGGGTGGGATAAACCGAAGGATCTTGATGAAGTTCTCGTTGTTTATGAGGCTCGCCTTCAAGATGGCACGCTTATCTCGAAGTCTGATGGGGTTGAATTTACTGTTGAAGATGGCTACTTCTGTCCTGCCCTGGCAACAGCTGTGAAGACAATGAAGAAGGAAGAAAAGGTGCTATTGACTGTGAAGCCACGATATGCATTTGGGGAGTCTGGTAGGTCCGCAGCTGGAGAAGAAGCTGCTGTGCCTCCAAATGCTACACTTGAGATAACACTTCAGTTGGTTTCTTGGAAACCTGTTACGGACATCTCTAAAAGTAAGAAAGTCTTGAAAAAAACCCTGAAGGAAGGAGACGGATATGATCGGCCAAATGATGGAGGGGTGGTTCAAGTTAAATTAACCGGTAAGCTGGCTGATGGGACGATTTTCACTAAGCAGGGTGATGATGAGAAGCCTTTTGAGTTCAAAACTGATGAAGAGCAAGTCATTGAAGGACTTGATTTGGCTGTTAAAAATATGAAGAAAGGAGAAGTAGCCTTGGTTACTATCCAGCCGGAATATGCTTTTGGGTCTACTGACTCATCGCAAGAATTAGCTGTAGTTCCTGCAAAATCAACTGTATATTATGAGGTTGAGCTGCTTTCATTTGTTAAGGAGAAGGAATCCTGGGACCTAAACACACAGGAGAAAATAGAAGCAGCAGGGAAAAAGAAGGAAGAAGGAAATGCTTTGTTTAAGGCTGGAAAATATGACAGAGCATCAAGAAGATACGAAAAGGCTGTAAGTTATGTCGAACACGACACTTTCAATGACGAGGAGAAACAGCAAAGTAAGGTGCTGAAAATTTCATGCAATCTCAACAATGCTGCATGCAAGTTGAAAGTTAAAGACTACAAGCAAGCAGAGAAACTCTGTACTAAGGTGTTGGATCTCGACGGTAGAAATGTGAAAGCTCTTTATAGAAGGGCACAAGCATATATACAACTCATCGATCTTGATCTTGCAGAGCAGGATATAAAGAAGGCCCTCGAAATCGATCCCGACAACAGGGAAGTGAAAATGGAATATAGATTGCTGAAGGAGAAGGTGAGGAAATATAACAAGAAGGATGCACAGTTTTATGGCAATATATTCGCCAAAATGAACAAATTGGAGCAATCTAAATCTGCTAACTCAGGTGAGAAGCAGGAATCTGTGCCAATGACCATTGATAGCAAGGCCTGA 1728 43.06 MEGDFSLPSAANMNEDEEMGLPDDEAVSLIQKIDEEKEIGKNGLKKKLIKEGEGWETPDTGDEVEVHYTGTLLDGTQFDSSRDRGAPFKFKLGEGQVIKGWDEGIRTMKKGENAIFTVPPELAYGESGSTPTIPPKATLQFDVELLSWHRVKDICQDGGIYKKILVKGDGWDKPKDLDEVLVVYEARLQDGTLISKSDGVEFTVEDGYFCPALATAVKTMKKEEKVLLTVKPRYAFGESGRSAAGEEAAVPPNATLEITLQLVSWKPVTDISKSKKVLKKTLKEGDGYDRPNDGGVVQVKLTGKLADGTIFTKQGDDEKPFEFKTDEEQVIEGLDLAVKNMKKGEVALVTIQPEYAFGSTDSSQELAVVPAKSTVYYEVELLSFVKEKESWDLNTQEKIEAAGKKKEEGNALFKAGKYDRASRRYEKAVSYVEHDTFNDEEKQQSKVLKISCNLNNAACKLKVKDYKQAEKLCTKVLDLDGRNVKALYRRAQAYIQLIDLDLAEQDIKKALEIDPDNREVKMEYRLLKEKVRKYNKKDAQFYGNIFAKMNKLEQSKSANSGEKQESVPMTIDSKA 575
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 38144606 38148121 - evm.model.ptg000013l.943 HCH7g0943 548228
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0943 575 FunFam Peptidylprolyl isomerase 267 387 - -
HCH7g0943 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 177 266 IPR001179 GO:0003755(InterPro)
HCH7g0943 575 MobiDBLite consensus disorder prediction 1 21 - -
HCH7g0943 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 61 149 IPR001179 GO:0003755(InterPro)
HCH7g0943 575 MobiDBLite consensus disorder prediction 554 575 - -
HCH7g0943 575 SMART tpr_5 402 435 IPR019734 GO:0005515(InterPro)
HCH7g0943 575 SMART tpr_5 450 483 IPR019734 GO:0005515(InterPro)
HCH7g0943 575 SMART tpr_5 484 517 IPR019734 GO:0005515(InterPro)
HCH7g0943 575 SUPERFAMILY FKBP-like 274 402 - -
HCH7g0943 575 SUPERFAMILY FKBP-like 153 269 - -
HCH7g0943 575 Pfam Tetratricopeptide repeat 463 522 - -
HCH7g0943 575 ProSiteProfiles TPR repeat profile. 484 517 IPR019734 GO:0005515(InterPro)
HCH7g0943 575 Gene3D - 267 387 IPR046357 GO:0003755(InterPro)
HCH7g0943 575 FunFam Peptidylprolyl isomerase 153 266 - -
HCH7g0943 575 FunFam Peptidylprolyl isomerase 390 544 - -
HCH7g0943 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 172 262 IPR001179 GO:0003755(InterPro)
HCH7g0943 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 55 146 IPR001179 GO:0003755(InterPro)
HCH7g0943 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 290 382 IPR001179 GO:0003755(InterPro)
HCH7g0943 575 PANTHER PEPTIDYLPROLYL ISOMERASE 147 268 IPR050754 -
HCH7g0943 575 SUPERFAMILY TPR-like 391 550 IPR011990 GO:0005515(InterPro)
HCH7g0943 575 Coils Coil 517 537 - -
HCH7g0943 575 Gene3D - 153 266 IPR046357 GO:0003755(InterPro)
HCH7g0943 575 FunFam Peptidylprolyl isomerase 34 152 - -
HCH7g0943 575 SUPERFAMILY FKBP-like 15 154 - -
HCH7g0943 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 294 385 IPR001179 GO:0003755(InterPro)
HCH7g0943 575 Gene3D - 37 152 IPR046357 GO:0003755(InterPro)
HCH7g0943 575 Gene3D Tetratricopeptide repeat domain 388 544 IPR011990 GO:0005515(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g1038 HCH-Chr5:11854813 HCH7g0943 HCH-Chr7:38144606 1.40E-238 dispersed
HCH5g1211 HCH-Chr5:42138323 HCH7g0943 HCH-Chr7:38144606 1.00E-11 dispersed
HCH6g0529 HCH-Chr6:25829447 HCH7g0943 HCH-Chr7:38144606 5.10E-16 dispersed
HCH7g0943 HCH-Chr7:38144606 HCH9g0731 HCH-Chr9:4889525 1.60E-56 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0943 K09571 - csv:101210041 927.932