Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH7g0943 | ATGGAGGGCGATTTTTCGCTCCCATCAGCAGCTAACATGAACGAGGATGAAGAAATGGGCCTTCCAGACGACGAAGCAGTTAGCCTGATTCAAAAAATTGACGAAGAGAAGGAGATTGGAAAGAATGGGCTCAAGAAGAAACTTATTAAGGAAGGTGAGGGATGGGAAACTCCTGATACTGGCGATGAAGTCGAAGTACATTATACTGGAACGCTTCTTGATGGGACTCAGTTTGATTCGAGCCGTGACCGAGGGGCGCCTTTTAAGTTCAAGCTTGGCGAAGGACAAGTGATTAAAGGATGGGATGAAGGTATCAGAACTATGAAGAAAGGTGAAAATGCAATTTTCACGGTACCTCCTGAATTGGCTTATGGGGAGTCCGGTTCTACTCCGACCATTCCACCGAAGGCTACTCTTCAGTTTGATGTGGAGTTACTCTCTTGGCATCGTGTCAAAGATATCTGCCAAGATGGAGGAATTTACAAGAAAATACTTGTTAAGGGAGATGGGTGGGATAAACCGAAGGATCTTGATGAAGTTCTCGTTGTTTATGAGGCTCGCCTTCAAGATGGCACGCTTATCTCGAAGTCTGATGGGGTTGAATTTACTGTTGAAGATGGCTACTTCTGTCCTGCCCTGGCAACAGCTGTGAAGACAATGAAGAAGGAAGAAAAGGTGCTATTGACTGTGAAGCCACGATATGCATTTGGGGAGTCTGGTAGGTCCGCAGCTGGAGAAGAAGCTGCTGTGCCTCCAAATGCTACACTTGAGATAACACTTCAGTTGGTTTCTTGGAAACCTGTTACGGACATCTCTAAAAGTAAGAAAGTCTTGAAAAAAACCCTGAAGGAAGGAGACGGATATGATCGGCCAAATGATGGAGGGGTGGTTCAAGTTAAATTAACCGGTAAGCTGGCTGATGGGACGATTTTCACTAAGCAGGGTGATGATGAGAAGCCTTTTGAGTTCAAAACTGATGAAGAGCAAGTCATTGAAGGACTTGATTTGGCTGTTAAAAATATGAAGAAAGGAGAAGTAGCCTTGGTTACTATCCAGCCGGAATATGCTTTTGGGTCTACTGACTCATCGCAAGAATTAGCTGTAGTTCCTGCAAAATCAACTGTATATTATGAGGTTGAGCTGCTTTCATTTGTTAAGGAGAAGGAATCCTGGGACCTAAACACACAGGAGAAAATAGAAGCAGCAGGGAAAAAGAAGGAAGAAGGAAATGCTTTGTTTAAGGCTGGAAAATATGACAGAGCATCAAGAAGATACGAAAAGGCTGTAAGTTATGTCGAACACGACACTTTCAATGACGAGGAGAAACAGCAAAGTAAGGTGCTGAAAATTTCATGCAATCTCAACAATGCTGCATGCAAGTTGAAAGTTAAAGACTACAAGCAAGCAGAGAAACTCTGTACTAAGGTGTTGGATCTCGACGGTAGAAATGTGAAAGCTCTTTATAGAAGGGCACAAGCATATATACAACTCATCGATCTTGATCTTGCAGAGCAGGATATAAAGAAGGCCCTCGAAATCGATCCCGACAACAGGGAAGTGAAAATGGAATATAGATTGCTGAAGGAGAAGGTGAGGAAATATAACAAGAAGGATGCACAGTTTTATGGCAATATATTCGCCAAAATGAACAAATTGGAGCAATCTAAATCTGCTAACTCAGGTGAGAAGCAGGAATCTGTGCCAATGACCATTGATAGCAAGGCCTGA | 1728 | 43.06 | MEGDFSLPSAANMNEDEEMGLPDDEAVSLIQKIDEEKEIGKNGLKKKLIKEGEGWETPDTGDEVEVHYTGTLLDGTQFDSSRDRGAPFKFKLGEGQVIKGWDEGIRTMKKGENAIFTVPPELAYGESGSTPTIPPKATLQFDVELLSWHRVKDICQDGGIYKKILVKGDGWDKPKDLDEVLVVYEARLQDGTLISKSDGVEFTVEDGYFCPALATAVKTMKKEEKVLLTVKPRYAFGESGRSAAGEEAAVPPNATLEITLQLVSWKPVTDISKSKKVLKKTLKEGDGYDRPNDGGVVQVKLTGKLADGTIFTKQGDDEKPFEFKTDEEQVIEGLDLAVKNMKKGEVALVTIQPEYAFGSTDSSQELAVVPAKSTVYYEVELLSFVKEKESWDLNTQEKIEAAGKKKEEGNALFKAGKYDRASRRYEKAVSYVEHDTFNDEEKQQSKVLKISCNLNNAACKLKVKDYKQAEKLCTKVLDLDGRNVKALYRRAQAYIQLIDLDLAEQDIKKALEIDPDNREVKMEYRLLKEKVRKYNKKDAQFYGNIFAKMNKLEQSKSANSGEKQESVPMTIDSKA | 575 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 38144606 | 38148121 | - | evm.model.ptg000013l.943 | HCH7g0943 | 548228 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH7g0943 | 575 | FunFam | Peptidylprolyl isomerase | 267 | 387 | - | - | |
| HCH7g0943 | 575 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 177 | 266 | IPR001179 | GO:0003755(InterPro) | |
| HCH7g0943 | 575 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| HCH7g0943 | 575 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 61 | 149 | IPR001179 | GO:0003755(InterPro) | |
| HCH7g0943 | 575 | MobiDBLite | consensus disorder prediction | 554 | 575 | - | - | |
| HCH7g0943 | 575 | SMART | tpr_5 | 402 | 435 | IPR019734 | GO:0005515(InterPro) | |
| HCH7g0943 | 575 | SMART | tpr_5 | 450 | 483 | IPR019734 | GO:0005515(InterPro) | |
| HCH7g0943 | 575 | SMART | tpr_5 | 484 | 517 | IPR019734 | GO:0005515(InterPro) | |
| HCH7g0943 | 575 | SUPERFAMILY | FKBP-like | 274 | 402 | - | - | |
| HCH7g0943 | 575 | SUPERFAMILY | FKBP-like | 153 | 269 | - | - | |
| HCH7g0943 | 575 | Pfam | Tetratricopeptide repeat | 463 | 522 | - | - | |
| HCH7g0943 | 575 | ProSiteProfiles | TPR repeat profile. | 484 | 517 | IPR019734 | GO:0005515(InterPro) | |
| HCH7g0943 | 575 | Gene3D | - | 267 | 387 | IPR046357 | GO:0003755(InterPro) | |
| HCH7g0943 | 575 | FunFam | Peptidylprolyl isomerase | 153 | 266 | - | - | |
| HCH7g0943 | 575 | FunFam | Peptidylprolyl isomerase | 390 | 544 | - | - | |
| HCH7g0943 | 575 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 172 | 262 | IPR001179 | GO:0003755(InterPro) | |
| HCH7g0943 | 575 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 55 | 146 | IPR001179 | GO:0003755(InterPro) | |
| HCH7g0943 | 575 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 290 | 382 | IPR001179 | GO:0003755(InterPro) | |
| HCH7g0943 | 575 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 147 | 268 | IPR050754 | - | |
| HCH7g0943 | 575 | SUPERFAMILY | TPR-like | 391 | 550 | IPR011990 | GO:0005515(InterPro) | |
| HCH7g0943 | 575 | Coils | Coil | 517 | 537 | - | - | |
| HCH7g0943 | 575 | Gene3D | - | 153 | 266 | IPR046357 | GO:0003755(InterPro) | |
| HCH7g0943 | 575 | FunFam | Peptidylprolyl isomerase | 34 | 152 | - | - | |
| HCH7g0943 | 575 | SUPERFAMILY | FKBP-like | 15 | 154 | - | - | |
| HCH7g0943 | 575 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 294 | 385 | IPR001179 | GO:0003755(InterPro) | |
| HCH7g0943 | 575 | Gene3D | - | 37 | 152 | IPR046357 | GO:0003755(InterPro) | |
| HCH7g0943 | 575 | Gene3D | Tetratricopeptide repeat domain | 388 | 544 | IPR011990 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH5g1038 | HCH-Chr5:11854813 | HCH7g0943 | HCH-Chr7:38144606 | 1.40E-238 | dispersed | |
| HCH5g1211 | HCH-Chr5:42138323 | HCH7g0943 | HCH-Chr7:38144606 | 1.00E-11 | dispersed | |
| HCH6g0529 | HCH-Chr6:25829447 | HCH7g0943 | HCH-Chr7:38144606 | 5.10E-16 | dispersed | |
| HCH7g0943 | HCH-Chr7:38144606 | HCH9g0731 | HCH-Chr9:4889525 | 1.60E-56 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH7g0943 | K09571 | - | csv:101210041 | 927.932 |