Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0981 ATGAGAGTGGGAAAATATGAATTAGGAAGAACGTTGGGAGAAGGCAATTTCGGAAAGGTCAAATTAGCCTTCGACCGTCGCTCCGGTCGTTATTTCGCCGTTAAGATTATCGACAAAGACAAGATTCTTCATCTTAACTTCTCCGATCAGATTAAGAGGGAAATAAGCACTCTAAAGCTTCTCAGGCATCCAAACGTTGTCAGACTTTACGAGGTATTAGCTAGTAAAACCAAGATTTATATGGTCATGGAGTGCGCCGCCGGTGGTGAATTGTTTGATAGAATTGAATCGAAAGGTAAAATAGATGAATTGGAAGGTAGAAGACTCTTTCAACAGCTCATTGATGGTCTTAGCTACTGCCATGATAAAGAAGTTTATCATAGAGATCTCAAGCTGGAAAACGTGCTTGTTGATGCTAAGGGAAACATAAAGATTTCTGATTTTGGACTCAGTGCTTTACCTCAGAATTTCAGGGGAGATGGTTTGCTGCACACAACCTGTGGAAGTCCCAATTATGTAGCACCAGAGATACTTGCTAATAAAGGATACGATGGGGCCCCTTCTGATATATGGTCATGTGGTGTTATTTTGTATGTTATTCTTACAGCTTGTCTTCCTTTTGATGAGACCAGTCTTGCTCTTCTTTACAAAAAGACTTTGAAGGGAGATTTTCAAATGCCCCAATGGTTATCAGTAGGTGCCAGAAAATTGATCAGGAGAATTCTGGATCCCAATCCTAATACTCGGATTACAATGGCGGAAATTAAAGAGGATGAGTGGTTCAAGAAGGATTTTGTTCCTGCTTCTCCTTGTTATGATGAAGAAGAGGGTATACTCTTTGATCATGAAGGAGCCATCTTATTGGATGATGAGCCATCTGATGTGGACAACAGTCCAGAATCTCCAGCTATTATCAATGCCTTTGAGTTAATTGGGATGTCTTCAAGCCTGGATCTATCTGGCTTCTTTGAGAAAGAGGATGTTTCTGAGAGGAAGATCAGATTTACATCTAACCGTTCTGCCAAAGACCTGCTCGAGAGAATCGAAGATATTGCAACGGATATGGGATTTAGAGTCCAAAAAAAGCATGGAAAGTTAAAAGTAATGCAAGAAAAAAGAAGTCAGAAAAGTCTAAGTAGTCTCTCATTCGAAGCAGAGGTCTTTGAGATAAGCCCATTGCTTCACGTAGTAGAACTAAAAAAATCTTTTGGAGATTCGTTAGCTTATAGAGAGCTATGTGAGAGGCTGTCCAGTGATTTGGGTGTGAACACAAGCTCCGAGCTCTGA 1287 40.48 MRVGKYELGRTLGEGNFGKVKLAFDRRSGRYFAVKIIDKDKILHLNFSDQIKREISTLKLLRHPNVVRLYEVLASKTKIYMVMECAAGGELFDRIESKGKIDELEGRRLFQQLIDGLSYCHDKEVYHRDLKLENVLVDAKGNIKISDFGLSALPQNFRGDGLLHTTCGSPNYVAPEILANKGYDGAPSDIWSCGVILYVILTACLPFDETSLALLYKKTLKGDFQMPQWLSVGARKLIRRILDPNPNTRITMAEIKEDEWFKKDFVPASPCYDEEEGILFDHEGAILLDDEPSDVDNSPESPAIINAFELIGMSSSLDLSGFFEKEDVSERKIRFTSNRSAKDLLERIEDIATDMGFRVQKKHGKLKVMQEKRSQKSLSSLSFEAEVFEISPLLHVVELKKSFGDSLAYRELCERLSSDLGVNTSSEL 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 40156758 40159683 - evm.model.ptg000013l.981 HCH7g0981 548266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0981 428 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 374 422 IPR001772 -
HCH7g0981 428 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524(InterPro)
HCH7g0981 428 ProSiteProfiles NAF domain profile. 300 324 IPR018451 GO:0007165(InterPro)
HCH7g0981 428 CDD CIPK_C 306 420 - -
HCH7g0981 428 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0981 428 FunFam Non-specific serine/threonine protein kinase 302 425 - -
HCH7g0981 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g0981 428 Pfam NAF domain 302 361 IPR004041 GO:0007165(InterPro)
HCH7g0981 428 Gene3D Kinase associated domain 1, KA1 299 422 - -
HCH7g0981 428 FunFam Non-specific serine/threonine protein kinase 1 302 - -
HCH7g0981 428 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 410 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
HCH7g0981 428 FunFam Non-specific serine/threonine protein kinase 1 85 - -
HCH7g0981 428 SUPERFAMILY KA1-like 333 421 IPR028375 -
HCH7g0981 428 SMART serkin_6 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0981 428 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0981 428 SUPERFAMILY Protein kinase-like (PK-like) 3 273 IPR011009 -
HCH7g0981 428 Gene3D Transferase(Phosphotransferase) domain 1 2 288 - -
HCH7g0981 428 Pfam Kinase associated domain 1 380 420 IPR001772 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0981 HCH-Chr7:40156758 HCH7g1747 HCH-Chr7:49176292 4.00E-121 dispersed
HCH6g1785 HCH-Chr6:50189761 HCH7g0981 HCH-Chr7:40156758 6.20E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81645 PF00069 Pkinase 1.70E-71 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0981 K07198 - csv:101205987 719.153