Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH7g1002 | ATGGCTGTCGATGCCGAAGCTGTTTCGGCTCCAGAATTGGCCCTAGCTGATACTGATATCAATTGGGACAGGTTGGACAAGACGAAGTTTAATATAATTGGGGCAGTACTTTTTACCGCTCAGTCAGCCTTCTTACATCCGACAGCAGTTGTAAAAACTAGAATGCAAGTAGCTGGTTCTGGTCTCTCTCACATGCGTGGAATGTCAGTTTTCTGGAATATATTGAGGACTGATGGAGTCCCTGGCATATATAGAGGTTTTGGTACTTCAGCCATTGGATCGTTACCTGGTAGAGTACTGTCTCTAACATCACTAGAAGTGTCAAAAGACATAATGTTGAAATATACCGAAGGTCTAGATATGCCCGAAGCAACACGTGTTGGACTTGCAAATGGAGTGGCAGGAATGATCTCAAACTTAGTTTCATGCATATACTATGTGCCATTGGATGTGACCTGCCAGAGGCTGATGGTTCAAGGGCTACCTGGAACTACCTTTTGTAATGGGCCATTTGATGTTATCCGTAAAGTGATCAAGTCTGAAGGATATCGTGGTTTATATAGAGGTTTTGGATTAACCGCTGTAACACAGTCCCCAGCATCTGCTCTCTGGTGGGGTGTCTATGGTGCTGCTCAGCATATTATATGGAGGAGCTTAGACTATCGAGATAATATGGAGAAGAAGCCTTCTCATTTGGAGATGGTGACAGTTCAGGCTTCAGCAGGAATGGTGGCAGGTGCCTGTTCCTCTGTTATTACGACTCCTTTAGACACAGTAAAAACACGACTTCAGGTCATCGATAACTATGGTATTGGAAGACCTTCAGTGCTCAAGACTACAAAGGCACTTCTCAAGGAAGATGGATGGCGAGGATTCTACAGAGGCTTTGGACCTCGTTTTTTGAATATGTCACTTTATGGAACTACGATGATAGTGACGTATGAATTGATCAAAAGACTGTCCATAAAGAAAGAGATGGTGACATCTTAA | 990 | 43.43 | MAVDAEAVSAPELALADTDINWDRLDKTKFNIIGAVLFTAQSAFLHPTAVVKTRMQVAGSGLSHMRGMSVFWNILRTDGVPGIYRGFGTSAIGSLPGRVLSLTSLEVSKDIMLKYTEGLDMPEATRVGLANGVAGMISNLVSCIYYVPLDVTCQRLMVQGLPGTTFCNGPFDVIRKVIKSEGYRGLYRGFGLTAVTQSPASALWWGVYGAAQHIIWRSLDYRDNMEKKPSHLEMVTVQASAGMVAGACSSVITTPLDTVKTRLQVIDNYGIGRPSVLKTTKALLKEDGWRGFYRGFGPRFLNMSLYGTTMIVTYELIKRLSIKKEMVTS | 329 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 41001183 | 41004380 | - | evm.model.ptg000013l.1002 | HCH7g1002 | 548287 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH7g1002 | 329 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 233 | 320 | IPR018108 | - | |
| HCH7g1002 | 329 | Pfam | Mitochondrial carrier protein | 237 | 324 | IPR018108 | - | |
| HCH7g1002 | 329 | Pfam | Mitochondrial carrier protein | 130 | 216 | IPR018108 | - | |
| HCH7g1002 | 329 | Pfam | Mitochondrial carrier protein | 33 | 115 | IPR018108 | - | |
| HCH7g1002 | 329 | SUPERFAMILY | Mitochondrial carrier | 23 | 316 | IPR023395 | - | |
| HCH7g1002 | 329 | Gene3D | Mitochondrial carrier domain | 23 | 125 | IPR023395 | - | |
| HCH7g1002 | 329 | Gene3D | Mitochondrial carrier domain | 126 | 327 | IPR023395 | - | |
| HCH7g1002 | 329 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 126 | 214 | IPR018108 | - | |
| HCH7g1002 | 329 | PANTHER | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J | 7 | 325 | - | - | |
| HCH7g1002 | 329 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 26 | 111 | IPR018108 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH4g1500 | HCH-Chr4:11418458 | HCH7g1002 | HCH-Chr7:41001183 | 6.10E-64 | dispersed | |
| HCH7g1002 | HCH-Chr7:41001183 | HCH8g1247 | HCH-Chr8:47775142 | 1.80E-17 | dispersed | |
| HCH7g1002 | HCH-Chr7:41001183 | HCH13g0668 | HCH-Chr13:5330930 | 1.40E-86 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH7g1002 | K15121 | - | csv:101213375 | 590.497 |